Parental gene: | PABPN1, ENSPTRG00000006168 |
| Aliases: | None |
| Description: | poly(A) binding protein, nuclear 1 [Source:HGNC Symbol;Acc:8565] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 14:22230105..22236104(+) |
>ENSPTRG00000006168
ATGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCGGGGGCTGCGGGCGGTCGGGGCTCCGGGCCGGGGCGGCGGCGCCATCT
TGTGCCCGGGGCCGGTGGGGAGGCCGGGGAGGGGGCCCCGGGGGGCGCAGGGGACTACGGGAACGGCCTGGAGTCTGAGG
AACTGGAGCCTGAGGAGCTGCTGCTGGAGCCCGAGCCGGAGCCCGAGCCCGAAGAGGAGCCGCCCCGGCCCCGCGCCCCC
CCGGGAGCTCCGGGCCCTGGGCCTGGTTCGGGAGCCCCCGGCAGCCAAGAGGAGGAGGAGGAGCCGGGACTGGTCGAGGG
TGACCCGGGGGACGGCGCCATTGAGGACCCGGAGCTGGAAGCTATCAAAGCTCGAGTCAGGGAGATGGAGGAAGAAGCTG
AGAAGCTAAAGGAGCTACAGAACGAGGTAGAGAAGCAGATGAATATGAGTCCACCACCAGGCAATGCTGGCCCAGTGATC
ATGTCCATTGAGGAGAAGATGGAGGCTGATGCCCGTTCCATCTATGTTGGCAATGTGGACTATGGTGCAACAGCAGAAGA
GCTGGAAGCTCACTTTCATGGCTGTGGTTCAGTCAACCGTGTTACCATACTCTGTGACAAATTTAGTGGCCATCCCAAAG
GGTTTGCGTATATAGAGTTCTCAGACAAAGAGTCAGTGAGGACTTCCTTGGCCTTAGATGAGTCCCTATTTAGAGGAAGG
CAAATCAAGGTGATCCCAAAACGAACCAACAGACCAGGCATCAGCACAACAGACCGGGGTTTTCCACGAGCCCGCTACCG
CGCCCGGACCACCAACTACAACAGTTCCCGCTCTCGATTCTACAGTGGTTTTAACAGCAGGCCCCGGGGTCGCGTCTACA
GGGGCCGGGCTAGAGCGACATCATGGTATTCCCCTTACTAA
ATGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCGGGGGCTGCGGGCGGTCGGGGCTCCGGGCCGGGGCGGCGGCGCCATCT
TGTGCCCGGGGCCGGTGGGGAGGCCGGGGAGGGGGCCCCGGGGGGCGCAGGGGACTACGGGAACGGCCTGGAGTCTGAGG
AACTGGAGCCTGAGGAGCTGCTGCTGGAGCCCGAGCCGGAGCCCGAGCCCGAAGAGGAGCCGCCCCGGCCCCGCGCCCCC
CCGGGAGCTCCGGGCCCTGGGCCTGGTTCGGGAGCCCCCGGCAGCCAAGAGGAGGAGGAGGAGCCGGGACTGGTCGAGGG
TGACCCGGGGGACGGCGCCATTGAGGACCCGGAGCTGGAAGCTATCAAAGCTCGAGTCAGGGAGATGGAGGAAGAAGCTG
AGAAGCTAAAGGAGCTACAGAACGAGGTAGAGAAGCAGATGAATATGAGTCCACCACCAGGCAATGCTGGCCCAGTGATC
ATGTCCATTGAGGAGAAGATGGAGGCTGATGCCCGTTCCATCTATGTTGGCAATGTGGACTATGGTGCAACAGCAGAAGA
GCTGGAAGCTCACTTTCATGGCTGTGGTTCAGTCAACCGTGTTACCATACTCTGTGACAAATTTAGTGGCCATCCCAAAG
GGTTTGCGTATATAGAGTTCTCAGACAAAGAGTCAGTGAGGACTTCCTTGGCCTTAGATGAGTCCCTATTTAGAGGAAGG
CAAATCAAGGTGATCCCAAAACGAACCAACAGACCAGGCATCAGCACAACAGACCGGGGTTTTCCACGAGCCCGCTACCG
CGCCCGGACCACCAACTACAACAGTTCCCGCTCTCGATTCTACAGTGGTTTTAACAGCAGGCCCCGGGGTCGCGTCTACA
GGGGCCGGGCTAGAGCGACATCATGGTATTCCCCTTACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 158 .83 RPM |
| SRP007412_cerebellum | 166 .73 RPM |
| SRP007412_heart | 49 .81 RPM |
| SRP007412_kidney | 125 .97 RPM |
| SRP007412_liver | 90 .58 RPM |
| SRP007412_testis | 140 .05 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000006884 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000007960 | ortholog_one2one | 4 retrogenes | |
| Dipodomys ordii | ENSDORG00000002873 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000100836 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000022683 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000006775 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000022194 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000015009 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000008710 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000005663 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000002023 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1339 | 82.41 | 70.26 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_3232 | 80.20 | 97.06 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000006168 retrocopies