Parental gene:

CCT5, ENSCJAG00000008977

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:193721496..193735964(-)


>ENSCJAG00000008977
ATGGCGTCCATGGGGACCCTCGCCTTCGATGAATATGGGCGGCCTTTCCTTATCATCAAGGATCAAGACCGCAAGTCCCG
TCTTATGGGCCTTGAGGCCCTCAAGTCTCATATAATGGCGGCAAAGGCTGTGGCAAATACAATGAGAACGTCGCTTGGAC
CAAATGGACTGGATAAGATGATGGTGGATAAGGATGGCGATGTGACTGTAACTAATGATGGTGCCACCATCTTAAGCATG
ATGGATGTCGATCATCAGATTGCCAAGCTCATGGTGGAACTATCCAAGTCTCAGGATGATGAAATTGGAGACGGAACCAC
AGGAGTGGTTGTCCTGGCTGGTGCCTTGTTAGAAGAAGCCGAGCAGTTGCTAGACCGAGGCATTCACCCAATCAGAATAG
CTGATGGCTATGAGCAGGCTGCCCGCGTTGCTATTGAACACCTGGACAAGATCAGCGATAGCGTCCTTGTTGACATAAAG
GACACCGAACCCCTGATTCAGACTGCAAAAACCACGCTGGGCTCCAAAGTGGTCAACAGTTGTCACCGACAAATGGCCGA
GATCGCTGTGAATGCCGTCCTCACTGTAGCAGACATGGAGCGCAGAGATGTGGACTTTGAGCTTATCAAAGTAGAAGGCA
AAGTGGGTGGCAGGCTGGAGGACACTAAGCTGATTAAGGGCGTGATCGTAGACAAGGATTTCAGTCACCCGCAGATGCCG
AAAAAAGTGGAAGATGCTAAGATTGCAATTCTCACATGTCCATTCGAACCACCCAAACCAAAAACGAAGCATAAGCTGGA
TGTGACCTCTGTAGAAGATTATAAAGCCCTTCAGAAATATGAAAAGGAGAAATTTGAAGAGATGATTCAACAGATTAAGG
AGACTGGTGCTAACCTAGCAATTTGTCAGTGGGGCTTTGATGATGAAGCAAATCACTTACTTCTTCAGAACAACTTGCCT
GCGGTGCGCTGGGTAGGAGGACCTGAAATTGAGCTGATTGCCATTGCAACAGGAGGGCGGATCGTCCCCAGGTTCTCAGA
GCTCACAGCCGAGAAGCTGGGCTTTGCTGGTCTTGTACAGGAGATCTCATTTGGAACGACTAAGGATAAAATGCTGGTCA
TCGAGCAGTGTAAGAACTCCAGAGCCGTAACCATTTTTATTAGAGGAGGAAATAAGATGATCATTGAGGAGGCGAAACGA
TCCCTTCACGATGCTCTGTGTGTCATCCGGAACCTCATCCGTGATAATCGTGTGGTGTATGGAGGAGGGGCTGCTGAGAT
ATCCTGTGCCCTGGCAGTTAGCCAAGAGGCAGATAAGTGCCCCACCTTAGAACAGTACGCCATGAGAGCATTTGCTGATG
CACTGGAGGTCATCCCCATGGCCCTGTCTGAAAACAGTGGCATGAATCCCATCCAGACTATGACCGAAGTCCGAGCCAGA
CAAGTGAAGGAGAGGAACCCTGCTCTTGGCATCGACTGTTTGCACAGGGGGACAAATGATATGAAGCAACAGCATGTCAT
AGAAACCTTGATTGGCAAAAAGCAACAAATATCTCTTGCGACACAAATGGTTAGAATGATTTTGAAGATTGATGACATTC
GTAAGCCTGGAGAATCTGAAGAATGA

Library Parental gene expression (RPM)
SRP051959_colon 53 .89 RPM
SRP051959_heart 51 .11 RPM
SRP051959_kidney 62 .52 RPM
SRP051959_liver 83 .03 RPM
SRP051959_lung 58 .90 RPM
SRP051959_lymph_node 69 .93 RPM
SRP051959_skeletal_muscle 66 .41 RPM
SRP051959_spleen 63 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000017889 possible_ortholog 1 retrogene
retro_btau_1432,
Homo sapiens ENSG00000150753 ortholog_one2many 2 retrogenes
retro_hsap_1219, retro_hsap_3230,
Gorilla gorilla ENSGGOG00000024064 ortholog_one2many 1 retrogene
retro_ggor_2197,
Myotis lucifugus ENSMLUG00000007977 possible_ortholog 1 retrogene
retro_mluc_1735,
Macaca mulatta ENSMMUG00000020112 ortholog_one2many 2 retrogenes
retro_mmul_1294, retro_mmul_2033,
Monodelphis domestica ENSMODG00000002356 ortholog_one2many 1 retrogene
retro_mdom_861,
Pan troglodytes ENSPTRG00000016725 ortholog_one2many 2 retrogenes
retro_ptro_2182, retro_ptro_834,
Tupaia belangeri ENSTBEG00000001201 ortholog_one2many 2 retrogenes
retro_tbel_1618, retro_tbel_4389,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_516 79.93 98.89
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Download FASTA sequences of all ENSCJAG00000008977 retrocopies