Parental gene: | PRDX6, ENSCJAG00000009355 |
| Aliases: | None |
| Description: | peroxiredoxin 6 [Source:HGNC Symbol;Acc:16753] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 18:33360019..33368974(-) |
>ENSCJAG00000009355
ATGCCTGGAGGTCTGCTTCTCGGGGACGTGGCTCCCAACTTTGAGGCCAATACCACCGTCGGCCCCATCCGTTTCCACGA
CTTTCTGGGAGACTCATGGGGCATTCTCTTCTCCCACCCTCGGGACTTTACCCCAGTGTGTACCACAGAGCTTGGCAGAG
CTGCAAAGTTGGCACCAGAATTTGCCAAGAGGAATGTTAAATTAATTGCCCTTTCAATAGACAGTGTCGAGGACCATCTT
GCCTGGAGCAAGGATATCAATGCTTACAATGGTGAAGAGCCCACAGAAAAACTACCTTTTCCCATCATTGATGATAAGAA
TCGGGACCTTGCCATCCTGTTGGGCATGCTGGATCCAGCAGAGAAGGATGAAAAGGGCATGCCTGTGACAGCTCGTGTGG
TATTTGTTTTTGGTCCTGATAAGAAGCTGAAGCTGTCTATCCTCTACCCAGCTACCACTGGCAGGAACTTTGATGAGATT
CTCAGAGTAGTCATCTCTCTCCAGCTGACAGCAGAAAAGAGAGTTGCCACCCCAGTTGATTGGAAGGATGGGGATAGTGT
GATGGTCCTTCCAACCATCCCTGAAGAAGAAGCCAAAAAACTTTTCCCAAAAGGAGTCTTCACCAAAGAGCTCCCATCTG
GCAAGAAATACCTCCGCTACACACCCCAGCCTTAA
ATGCCTGGAGGTCTGCTTCTCGGGGACGTGGCTCCCAACTTTGAGGCCAATACCACCGTCGGCCCCATCCGTTTCCACGA
CTTTCTGGGAGACTCATGGGGCATTCTCTTCTCCCACCCTCGGGACTTTACCCCAGTGTGTACCACAGAGCTTGGCAGAG
CTGCAAAGTTGGCACCAGAATTTGCCAAGAGGAATGTTAAATTAATTGCCCTTTCAATAGACAGTGTCGAGGACCATCTT
GCCTGGAGCAAGGATATCAATGCTTACAATGGTGAAGAGCCCACAGAAAAACTACCTTTTCCCATCATTGATGATAAGAA
TCGGGACCTTGCCATCCTGTTGGGCATGCTGGATCCAGCAGAGAAGGATGAAAAGGGCATGCCTGTGACAGCTCGTGTGG
TATTTGTTTTTGGTCCTGATAAGAAGCTGAAGCTGTCTATCCTCTACCCAGCTACCACTGGCAGGAACTTTGATGAGATT
CTCAGAGTAGTCATCTCTCTCCAGCTGACAGCAGAAAAGAGAGTTGCCACCCCAGTTGATTGGAAGGATGGGGATAGTGT
GATGGTCCTTCCAACCATCCCTGAAGAAGAAGCCAAAAAACTTTTCCCAAAAGGAGTCTTCACCAAAGAGCTCCCATCTG
GCAAGAAATACCTCCGCTACACACCCCAGCCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 27 .42 RPM |
| SRP051959_skeletal_muscle | 21 .44 RPM |
| SRP051959_lymph_node | 21 .73 RPM |
| SRP051959_lung | 32 .83 RPM |
| SRP051959_liver | 77 .55 RPM |
| SRP051959_kidney | 52 .16 RPM |
| SRP051959_heart | 33 .94 RPM |
| SRP051959_colon | 55 .91 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000015560 | ortholog_one2many | 1 retrogene | |
| Bos taurus | ENSBTAG00000004855 | ortholog_one2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000014579 | ortholog_one2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000011367 | ortholog_one2many | 6 retrogenes | |
| Cavia porcellus | ENSCPOG00000011091 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000022468 | ortholog_one2many | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000004040 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000117592 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000026357 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000008776 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000004032 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000004648 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000026701 | ortholog_many2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000015278 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000042455 | ortholog_one2many | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000002596 | ortholog_one2many | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000002896 | ortholog_one2many | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000003248 | ortholog_one2many | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000010073 | possible_ortholog | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000008478 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1903 | 99.55 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2188 | 79.56 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3008 | 94.64 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_3239 | 60.98 | 54.02 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_3830 | 88.89 | 60.27 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_4000 | 80.80 | 98.21 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000009355 retrocopies