Parental gene: | THUMPD1, ENSCJAG00000009499 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 12:20128657..20136649(-) |
>ENSCJAG00000009499
ATGGCGGCCCCTGCCCAGCAGCCTGCTCAGCCTGGCGGCGGGAAGCGCAAAGGCAAGGCTCAGTATGTGTTGGCCAAGCG
GGCTCGGCGCTGCGACGCCGGCGGGCCCCATCAGCTAGAGCCCGGGCTGCAGGGCATCCTCATCACCTGCAACATGAACG
AGCGCAAGTGCGTGGAGGAGGCTTACAGCCTACTCAACGAATATGGCGACGACATGTATGGGCCAGAAAAGCTTACAGAC
AAGGATCAGCAGCCTTCTGGAAGTGAGGGAGAAGATGATGATGTGGAGGCTGCCTTGAAGAAAGAAGTTGGTGATATTAA
GGCATCTACAGAGATGAGACTAAGAAGATTCCAGTCAGTGGAAAGTGGAGCAAATAACGTCGTCTTCATCAGGACACTTG
GAATAGAACCTGAGAAATTGGTGCATCATATTCTCCAGGATATGTACAAAACCAAGAAGAAGAAGACTCGAGTTATTCTA
CGAATGTTACCCATCTCAGGCACATGCAAGGCTTTTTTAGAAGATATGAAAAAATATGCAGAAACATTTTTGGAACCCTG
GTTTAAAGCTCCAAACAAAGGGACATTTCAGATTGTGTACAAATCTCGAAATAACAGTCACATGAATCGAGAAGAAGTTA
TCAGAGAATTGGCAGGAATAGTGGGCACCCTCAATTCAGAAAATAAAGTGAATCTGACCAATCCACAGTACACGGTGGTA
GTAGAAATCATCAAAGCTGTCTGTTGCCTGAGTGTTGTGAAAGATTACATGTTGTTTAGAAAATACAATCTCCAGGAGGT
GGTGAAGAGCCCTAAGGATCCGTCACAGCTTATCTCAAAGCAGGGAAATGGTACAGAAACTAAATTGGAATCTGCTGACA
AATCAGATCAAAACAACATAGCAGAAGGAAAAAATAACCAGCAGGTACCACAGAATACTGATGAGCTGGGGCAGACAAAA
CCAACGTCTAATCCCCAGGTGGTGAATGAGGGAGGAGGCAAACCTGAACTTGCAAGTCAAGCCACAGAAGGATCCAAGTC
AAATGAAAATGACCTCTCATAG
ATGGCGGCCCCTGCCCAGCAGCCTGCTCAGCCTGGCGGCGGGAAGCGCAAAGGCAAGGCTCAGTATGTGTTGGCCAAGCG
GGCTCGGCGCTGCGACGCCGGCGGGCCCCATCAGCTAGAGCCCGGGCTGCAGGGCATCCTCATCACCTGCAACATGAACG
AGCGCAAGTGCGTGGAGGAGGCTTACAGCCTACTCAACGAATATGGCGACGACATGTATGGGCCAGAAAAGCTTACAGAC
AAGGATCAGCAGCCTTCTGGAAGTGAGGGAGAAGATGATGATGTGGAGGCTGCCTTGAAGAAAGAAGTTGGTGATATTAA
GGCATCTACAGAGATGAGACTAAGAAGATTCCAGTCAGTGGAAAGTGGAGCAAATAACGTCGTCTTCATCAGGACACTTG
GAATAGAACCTGAGAAATTGGTGCATCATATTCTCCAGGATATGTACAAAACCAAGAAGAAGAAGACTCGAGTTATTCTA
CGAATGTTACCCATCTCAGGCACATGCAAGGCTTTTTTAGAAGATATGAAAAAATATGCAGAAACATTTTTGGAACCCTG
GTTTAAAGCTCCAAACAAAGGGACATTTCAGATTGTGTACAAATCTCGAAATAACAGTCACATGAATCGAGAAGAAGTTA
TCAGAGAATTGGCAGGAATAGTGGGCACCCTCAATTCAGAAAATAAAGTGAATCTGACCAATCCACAGTACACGGTGGTA
GTAGAAATCATCAAAGCTGTCTGTTGCCTGAGTGTTGTGAAAGATTACATGTTGTTTAGAAAATACAATCTCCAGGAGGT
GGTGAAGAGCCCTAAGGATCCGTCACAGCTTATCTCAAAGCAGGGAAATGGTACAGAAACTAAATTGGAATCTGCTGACA
AATCAGATCAAAACAACATAGCAGAAGGAAAAAATAACCAGCAGGTACCACAGAATACTGATGAGCTGGGGCAGACAAAA
CCAACGTCTAATCCCCAGGTGGTGAATGAGGGAGGAGGCAAACCTGAACTTGCAAGTCAAGCCACAGAAGGATCCAAGTC
AAATGAAAATGACCTCTCATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 20 .61 RPM |
| SRP051959_skeletal_muscle | 11 .66 RPM |
| SRP051959_lymph_node | 18 .22 RPM |
| SRP051959_lung | 18 .51 RPM |
| SRP051959_liver | 17 .11 RPM |
| SRP051959_kidney | 47 .66 RPM |
| SRP051959_heart | 16 .12 RPM |
| SRP051959_colon | 15 .49 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000008919 | ortholog_many2many | 1 retrogene | |
| Felis catus | ENSFCAG00000015158 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000066654 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000005231 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000004225 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000006971 | ortholog_many2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000012369 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000007848 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_915 | 86.31 | 94.90 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000009499 retrocopies