RetrogeneDB ID: | retro_cpor_71 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_108:4142950..4144015(+) | ||
Located in intron of: | ENSCPOG00000012254 | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000023684 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000008919 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 100. % |
Parental protein coverage: | 91.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAPAQQPPQPGGGKRKGKAQYVQAKRARRCDAGGPRQLEPGLQGILITCNMNERKCVEEAYSLLNEYGD |
MAAPAQQPPQPGGGKRKGKAQYVQAKRARRCDAGGPRQLEPGLQGILITCNMNERKCVEEAYSLLNEYGD | |
Retrocopy | MAAPAQQPPQPGGGKRKGKAQYVQAKRARRCDAGGPRQLEPGLQGILITCNMNERKCVEEAYSLLNEYGD |
Parental | NLYGPEKFTDKDQQLSGSEGEDDMEAALKKEVDDIKASTEKRLRRFQSIESGANNVVFIRTLGIEPEKLV |
NLYGPEKFTDKDQQLSGSEGEDDMEAALKKEVDDIKASTEKRLRRFQSIESGANNVVFIRTLGIEPEKLV | |
Retrocopy | NLYGPEKFTDKDQQLSGSEGEDDMEAALKKEVDDIKASTEKRLRRFQSIESGANNVVFIRTLGIEPEKLV |
Parental | HHILQDVYKTKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWFKAPNKGTFQIVYKSRNNSHMNRE |
HHILQDVYKTKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWFKAPNKGTFQIVYKSRNNSHMNRE | |
Retrocopy | HHILQDVYKTKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWFKAPNKGTFQIVYKSRNNSHMNRE |
Parental | EVIKELAGIVGCLNSENKVDLTNPQYTVVVEIIKAVCCLSVVKDYMLFRKYNLQEVVKTANDPSQPSPKL |
EVIKELAGIVGCLNSENKVDLTNPQYTVVVEIIKAVCCLSVVKDYMLFRKYNLQEVVKTANDPSQPSPKL | |
Retrocopy | EVIKELAGIVGCLNSENKVDLTNPQYTVVVEIIKAVCCLSVVKDYMLFRKYNLQEVVKTANDPSQPSPKL |
Parental | RNGKEARLETDNKLNQNDPKEGEDNQQVVPQNNEEKLEEAKPGSETQVETEEGTKAEPSIQIQEGSKSNE |
RNGKEARLETDNKLNQNDPKEGEDNQQVVPQNNEEKLEEAKPGSETQVETEEGTKAEPSIQIQEGSKSNE | |
Retrocopy | RNGKEARLETDNKLNQNDPKEGEDNQQVVPQNNEEKLEEAKPGSETQVETEEGTKAEPSIQIQEGSKSNE |
Parental | NDLS |
NDLS | |
Retrocopy | NDLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .92 RPM | 1 .21 RPM |
SRP017611_kidney | 0 .94 RPM | 1 .67 RPM |
SRP017611_liver | 0 .78 RPM | 1 .09 RPM |
SRP040447_lung | 0 .83 RPM | 1 .21 RPM |
SRP040447_skeletal_muscle | 1 .38 RPM | 1 .44 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009499 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008919 | 1 retrocopy |
retro_cpor_71 ,
|
Felis catus | ENSFCAG00000015158 | 1 retrocopy | |
Homo sapiens | ENSG00000066654 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005231 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004225 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000006971 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012369 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007848 | 1 retrocopy |