Parental gene:

HAX1, ENSCJAG00000009660

Aliases:None
Description:HCLS1 associated protein X-1 [Source:HGNC Symbol;Acc:16915]
Organism:Marmoset (Callithrix jacchus)
Coordinates:18:8228662..8232634(+)


>ENSCJAG00000009660
ATGAGCCTCTTTGATCTCTTCCGGGGCTTTTTCGGCTTTCCTGGACCTCGGAGCCACAGAGATCCCTTTTTTGGAGGGAT
GACTCGAGATGAAGATGATGAGGAGGAAGAGGAAGAAGGAGGCGCATGGGGCCGTGGGAACCCCAGGTTCGATAGTCCTC
AGCCCCCTGAGGAATTTGGCTTCAGCTTCAGCCCAGGAGGAGGGATACGTTTACATGATAACTTCGGCTTTGATGACCTA
AACTTCCAGGTCCTGAGTCAGAGACACCTGGTGAGAGACTGCGGGAGGGACAAACACTTCGGGACTCAATGCTTAAGTAT
CCAGATAGTCACCAGCCCAGGATCTTTGGGGGGGTCTTGGAGAGTGATGCAAGAAGTGAATCCCCCAAACCAACACCATA
CTGGGGCTTCCAGAGACCATTTCATAGGTTTGATGACATATGGCCTGTGGACCCTCATCCTAGAACCAGAGAGGACAATG
TTTCTTCCTGTACACTTGTCTTTTTTCCCTTGGAATCTTTCTCTCCTGGTTCTTTTCTCTGCTCTTCCAGATCTTGATGC
CCAGGTTGCCCAGGAGGGTCTTGGCTCGGTTCTACAGCCCCAGCCCAAATCCTATTTCAAGAGCATCTCTGTGACCAAGA
TCACTAAGCCAGATGGGGTAGTGGAGGAGCGCAGGACGGTGGTAGACAGTGAGGGCCGGACAGAGACCACAGTAACCCGA
CATGAAGCAGATAGCAGTCCTAGGGGTGATCCAGAATCACCAAGACTTCCAGCCCTGGATGATGCCTTCTCCATCCTGGA
CTTATTCCTAGGACGTTGGTTCAGGTCCCGGTAG

Library Parental gene expression (RPM)
SRP051959_spleen 13 .78 RPM
SRP051959_skeletal_muscle 34 .22 RPM
SRP051959_lymph_node 13 .81 RPM
SRP051959_lung 12 .23 RPM
SRP051959_liver 18 .56 RPM
SRP051959_kidney 14 .13 RPM
SRP051959_heart 17 .84 RPM
SRP051959_colon 11 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000016727 ortholog_one2one 1 retrogene
retro_dnov_1537,
Dipodomys ordii ENSDORG00000012587 ortholog_one2one 1 retrogene
retro_dord_769,
Homo sapiens ENSG00000143575 ortholog_one2one 1 retrogene
retro_hsap_4912,
Microcebus murinus ENSMICG00000010414 ortholog_one2one 2 retrogenes
retro_mmur_1118, retro_mmur_1284,
Monodelphis domestica ENSMODG00000017215 ortholog_one2one 1 retrogene
retro_mdom_433,
Mus musculus ENSMUSG00000027944 ortholog_one2one 3 retrogenes
retro_mmus_1306, retro_mmus_2000, retro_mmus_353,
Nomascus leucogenys ENSNLEG00000011290 ortholog_one2one 1 retrogene
retro_nleu_2286,
Pan troglodytes ENSPTRG00000001380 ortholog_one2one 1 retrogene
retro_ptro_3275,
Rattus norvegicus ENSRNOG00000045647 ortholog_one2many 1 retrogene
retro_rnor_736,
Tupaia belangeri ENSTBEG00000014445 ortholog_one2one 1 retrogene
retro_tbel_930,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1888 82.86 62.91
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Download FASTA sequences of all ENSCJAG00000009660 retrocopies