Parental gene:

HAX1, ENSDNOG00000016727

Aliases:None
Description:HCLS1 associated protein X-1 [Source:HGNC Symbol;Acc:16915]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_3814:214783..217298(+)


>ENSDNOG00000016727
ATGAGCTTGGATCTCCGGGGCTTTTTCGGCTTTTCTGGACCTCGGAGCCACAGAGATCCCTTTTTTGGAGGGATGACTCG
AGATGAAGAGGAGGAGGATGAGGAAGAGGAAGAGGAAGAAGGAGGAGGAGCCACGTGGGGCCATGGAAGCCCCAGGTTTG
GGGTTCCCCAGCACCCCGAGGAATTTGGCTTCAGCTTCAGCCCAGGAGGAGGGATACATTTCCATGATAACTTCGGCTTT
GATGACCTAGTACGGGATTTCAATAACATCTTCAGCGAAATGGGGGCCTGGACCTTGCCTTCCCACTCTGATCTTCCAGG
TCCTGAGTCAGAAACACCTGGTGAGAGATGGCGGGAGGGAGAGACGCTTCGGGACTCAATGCTTAAGTATCCAGATAGTC
ACCAGCCCAGAATTTTTGGGGGGGTCTTGGAGAGTGATGCAGGAACTGAATCCCCTAAATCAGCACCAGACTGGGGCTCC
CAGAGACCTTTTCATAGGTTTGATGATATGTGGCCTGTGACCCCCCATCCTAGAACCAGAGAGGACAATGATCTTGATTC
CCAGGTTTCCCAGGAGGGCCTTGGCCCGGTTCTGCAACCCCAGCCCAAATCCTATTTCAAGAGCATCTCTGTGACCAAGA
TCACTAAGCCAGATGGGACAGTGGAGGAGCGCCGGACTGTGGTAGACAGCAAGGGCCAGACAGAGACCACAGTCACCCGT
CAAGAAGGAGACATCAGCCCTAGAGATCCAGAATTCTCAGGACCTCCAGCCCTGGATGATGCCTCGTCCATCTTGGATTT
ATTCCTAGGACGTTGGTTCCGGTTTCGGTAG

Library Parental gene expression (RPM)
SRP012922_ascending_colon 63 .01 RPM
SRP012922_cerebellum 57 .87 RPM
SRP012922_heart 95 .36 RPM
SRP012922_kidney 85 .70 RPM
SRP012922_liver 71 .06 RPM
SRP012922_lung 76 .67 RPM
SRP012922_quadricep_muscle 105 .58 RPM
SRP012922_spleen 71 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009660 ortholog_one2one 1 retrogene
retro_cjac_1888,
Dipodomys ordii ENSDORG00000012587 ortholog_one2one 1 retrogene
retro_dord_769,
Homo sapiens ENSG00000143575 ortholog_one2one 1 retrogene
retro_hsap_4912,
Microcebus murinus ENSMICG00000010414 ortholog_one2one 2 retrogenes
retro_mmur_1118, retro_mmur_1284,
Monodelphis domestica ENSMODG00000017215 ortholog_one2one 1 retrogene
retro_mdom_433,
Mus musculus ENSMUSG00000027944 ortholog_one2one 3 retrogenes
retro_mmus_1306, retro_mmus_2000, retro_mmus_353,
Nomascus leucogenys ENSNLEG00000011290 ortholog_one2one 1 retrogene
retro_nleu_2286,
Pan troglodytes ENSPTRG00000001380 ortholog_one2one 1 retrogene
retro_ptro_3275,
Rattus norvegicus ENSRNOG00000045647 ortholog_one2many 1 retrogene
retro_rnor_736,
Tupaia belangeri ENSTBEG00000014445 ortholog_one2one 1 retrogene
retro_tbel_930,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1537 68.89 63.77
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Download FASTA sequences of all ENSDNOG00000016727 retrocopies