Parental gene: | TRIM38, ENSCJAG00000010938 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 4:2405065..2420888(-) |
>ENSCJAG00000010938
ATGGCCTCAACCACCAGCACCAAGAGGATGATGGAGGAAGCCACCTGCTCCATCTGCCTGAGCCTGATGACGAACCCAGT
AAGCGTCAACTGTGGACACAGCTACTGCCAGTTGTGTATAATGGACTTCTTTAAAAACCCAAGCCAAAAGCAACTGAGGC
AGAAGATGCTCTGGTGTCCCCAGTGCCGGGCTCCATTCCACTTGGATAGCGTCAGACCCAACAAGCAGCTGGGAAACCTT
ATTGAAGCTCTCAAAGAGATGGATCACGAAATGTCATGTGAGGAACACAGAGAGCAGCTCCACCTGTTCTGTGAAGATGA
AGGACGGCTCATCTGCTGGCGCTGTGAGCGGGCACCGCAGCATAAAGGTCATACCACAGTGCTTGTTGAAGAGGTATGCC
AGGGCTACAAGGAAAAGCTCCAGAATGCTGTGACAAATTTGAGGCAACTTGAAGACAGATGTACGGAGCAGAAGCTGTTC
ACAGCAATACAAATAACTAAATGGAAAGAGAAGATACAGATTCAGAGACAAAAAATCCAGTCTGACTTTAAGAGTCTCCA
GAGTTTCCTACATGAGGAAGAGAAATGTTATCTCTGGAGACTGGAGAAAGAAGAACAACAGACTCTGAGTAGACTGAGGG
ACCGTGAGGCCAGTCTGGGGCTGAAGAGCGACGAACTCAATAGACACATCCTGGAACTGGAGGAAAAATGTCAGGGCTCA
GCCCAAAAATTGCTGCAGAATGTGAATGACACTTTGAGCAGGAGTGGAGCTGTGAAGCTGGAAACATCAGAGGCCGTCTC
CTTGGAGCTTCATACTATGTGCAATGTTTCTGAGCTTTATTTTGACGTGAAGAAAATGTTAAGGAGTCATCAAGTCAGTG
TGACTCTGGATCCAGATACAGCTCATCATGAACTAATTCTGTCTGAAGATCGGAGACAAGTGACTCGAGGATACCCCCAG
CAGAATCAGGACACTTCTTCCAGGAGATTTAGTGCCTTGCCCTGTGTCTTGGGTTGTGAAGGCTTCACCTCAGGAAGATG
CTACTTTGAAGTGGATGTTGGAGAAGGAACTGGGTGGGATTTAGGAGTTTGTGTGGAAAATGTGCAGAGGGGCACTGGCA
TGAAGCAAGAGCCTCAGTTTGGATTCTGGACCCTAAGGCTGTGCAAAAAGAAAGGTTATGTAGCGCTAACTTCTCCCCCA
ACTTCCCTTCTTCTGCCTGAGCAGCCCCTGGTTGTGGGAGTTTTTCTGGACTGTGAGGCCGGAGTTGTATCCTTTTACAA
CGGGACTACTGGCTGCCACATCTTCACCTTCCCAAAGGCTTCCTTCTCTGATACTCTCCGGCCCTATTTCCAGGTTTATC
ATTATTCTCCTTTATTTCTGCCTCCCCTAGATGATTAA
ATGGCCTCAACCACCAGCACCAAGAGGATGATGGAGGAAGCCACCTGCTCCATCTGCCTGAGCCTGATGACGAACCCAGT
AAGCGTCAACTGTGGACACAGCTACTGCCAGTTGTGTATAATGGACTTCTTTAAAAACCCAAGCCAAAAGCAACTGAGGC
AGAAGATGCTCTGGTGTCCCCAGTGCCGGGCTCCATTCCACTTGGATAGCGTCAGACCCAACAAGCAGCTGGGAAACCTT
ATTGAAGCTCTCAAAGAGATGGATCACGAAATGTCATGTGAGGAACACAGAGAGCAGCTCCACCTGTTCTGTGAAGATGA
AGGACGGCTCATCTGCTGGCGCTGTGAGCGGGCACCGCAGCATAAAGGTCATACCACAGTGCTTGTTGAAGAGGTATGCC
AGGGCTACAAGGAAAAGCTCCAGAATGCTGTGACAAATTTGAGGCAACTTGAAGACAGATGTACGGAGCAGAAGCTGTTC
ACAGCAATACAAATAACTAAATGGAAAGAGAAGATACAGATTCAGAGACAAAAAATCCAGTCTGACTTTAAGAGTCTCCA
GAGTTTCCTACATGAGGAAGAGAAATGTTATCTCTGGAGACTGGAGAAAGAAGAACAACAGACTCTGAGTAGACTGAGGG
ACCGTGAGGCCAGTCTGGGGCTGAAGAGCGACGAACTCAATAGACACATCCTGGAACTGGAGGAAAAATGTCAGGGCTCA
GCCCAAAAATTGCTGCAGAATGTGAATGACACTTTGAGCAGGAGTGGAGCTGTGAAGCTGGAAACATCAGAGGCCGTCTC
CTTGGAGCTTCATACTATGTGCAATGTTTCTGAGCTTTATTTTGACGTGAAGAAAATGTTAAGGAGTCATCAAGTCAGTG
TGACTCTGGATCCAGATACAGCTCATCATGAACTAATTCTGTCTGAAGATCGGAGACAAGTGACTCGAGGATACCCCCAG
CAGAATCAGGACACTTCTTCCAGGAGATTTAGTGCCTTGCCCTGTGTCTTGGGTTGTGAAGGCTTCACCTCAGGAAGATG
CTACTTTGAAGTGGATGTTGGAGAAGGAACTGGGTGGGATTTAGGAGTTTGTGTGGAAAATGTGCAGAGGGGCACTGGCA
TGAAGCAAGAGCCTCAGTTTGGATTCTGGACCCTAAGGCTGTGCAAAAAGAAAGGTTATGTAGCGCTAACTTCTCCCCCA
ACTTCCCTTCTTCTGCCTGAGCAGCCCCTGGTTGTGGGAGTTTTTCTGGACTGTGAGGCCGGAGTTGTATCCTTTTACAA
CGGGACTACTGGCTGCCACATCTTCACCTTCCCAAAGGCTTCCTTCTCTGATACTCTCCGGCCCTATTTCCAGGTTTATC
ATTATTCTCCTTTATTTCTGCCTCCCCTAGATGATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 17 .27 RPM |
| SRP051959_skeletal_muscle | 2 .71 RPM |
| SRP051959_lymph_node | 16 .92 RPM |
| SRP051959_lung | 13 .11 RPM |
| SRP051959_liver | 5 .74 RPM |
| SRP051959_kidney | 8 .63 RPM |
| SRP051959_heart | 6 .52 RPM |
| SRP051959_colon | 10 .10 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000020681 | other_paralog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1507 | 82.81 | 81.08 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000010938 retrocopies