Parental gene: | TRIM39, ENSCJAG00000020681 |
| Aliases: | None |
| Description: | tripartite motif containing 39 [Source:HGNC Symbol;Acc:10065] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 4:30630875..30652297(+) |
>ENSCJAG00000020681
ATGGCAGAGACAAGTCTGTTAGAGGCTGGGGCCTCTGCAGCCTCCACAGCTGCAGCTTTGGAGAACTTACAGGTGGAGGC
AAGCTGCTCTGTGTGCTTGGAGTATCTGAAGGAGCCTGTCATTATTGAGTGTGGGCACAACTTCTGTAAAGCTTGCATCA
CCCGCTGGTGGGAGGACCTAGAGAGGGACTTTCCTTGTCCTGTCTGTCGAAAGACATCACGCTACCGCAGTCTCCGGCCT
AATCGGCAACTAGGCAGTATGGTAGAAATTGCCAAGCAGCTACAGGCCGTCAAGCGGAAGATCCGGGACGAGAGCCTCTG
CCCCCAACACCATGAAGCCCTTAGCCTTTTCTGTTATGAGGACCAGGAGGCTGTATGCTTGATATGTGCAATTTCCCACA
CCCACCGGGCCCACACCGTTGTGCCACTGGACGACGCTACACAGGAGTACAAGGAAAAACTGCAGAAGTGTCTGGAGCCC
CTGGAACAGAAGCTGCAGGAGATCACTCGCTGCAAGTCCTCTGAGGAGAAGAAGCCTAGTGAGCTCAAGAGACTAGTGGA
AAGTCGCCGACAGCAGATCTTAAGAGAGTTTGAAGAGCTTCATAGGCGGCTGGATGAAGAGCAGCAGGTGTTGCTTTCAC
GACTGGAAGAAGAAGAACAGGACATTCTGCAGCGACTCCGAGAAAATGCTGCTCACCTTGGGGACAAGCGCCGGGACCTG
GCCCACTTGGCTGCTGAGGTGGAGGGCAAGTGCTTACAGTCGGGCTTCGAGATGCTTAAGGATGTCAAAAGTACCCTGGA
AAAATGTGAGAAGGTGAAGACCATGGAGGTGACTTCAGTATCCATAGAGCTGGAAAAGAACTTCAGCAATTTCCCCCGAC
AGTACTTTGCCCTAAGGAAAATCCTTAAACAGCTAATTGCGGATGTGACCCTGGATCCTGAGACGGCTCATCCTAACCTA
GTCCTGTCGGAGGATCGTAAGAGTGTCAAGTTCGTGGAGACAAGACTCCGGGATCTTCCTGATACACCAAGGCGTTTCAC
CTTCTACCCTTGCGTCCTGGCTACTGAGGGTTTCACCTCAGGTCGACACTACTGGGAGGTGGAGGTGGGCGACAAAACCC
ACTGGGCAGTGGGTGTGTGCCGGGACTCTGTGAGCCGAAAGGGCGAGTTGACTCCACTCCCTGAGACTGGTTACTGGCGG
GTGCGGCTATGGAATGGGGACAAATACGCAGCCACCACCACACCTTTTACCCCTTTGCACATCAAGGTGAAACCCAAGCG
GGTAGGCATATTCCTAGACTATGAGGCCGGCACACTGTCTTTCTACAATGTCACAGACCGCTCTCATATCTACACTTTCA
CTGATACTTTTACTGAGAAACTTTGGCCCCTCTTCTACCCGGGCATCCGGGCTGGACGGAAGAATGCTGCACCACTTACC
ATCAGACCCCCAACAGATTGGGAGTGA
ATGGCAGAGACAAGTCTGTTAGAGGCTGGGGCCTCTGCAGCCTCCACAGCTGCAGCTTTGGAGAACTTACAGGTGGAGGC
AAGCTGCTCTGTGTGCTTGGAGTATCTGAAGGAGCCTGTCATTATTGAGTGTGGGCACAACTTCTGTAAAGCTTGCATCA
CCCGCTGGTGGGAGGACCTAGAGAGGGACTTTCCTTGTCCTGTCTGTCGAAAGACATCACGCTACCGCAGTCTCCGGCCT
AATCGGCAACTAGGCAGTATGGTAGAAATTGCCAAGCAGCTACAGGCCGTCAAGCGGAAGATCCGGGACGAGAGCCTCTG
CCCCCAACACCATGAAGCCCTTAGCCTTTTCTGTTATGAGGACCAGGAGGCTGTATGCTTGATATGTGCAATTTCCCACA
CCCACCGGGCCCACACCGTTGTGCCACTGGACGACGCTACACAGGAGTACAAGGAAAAACTGCAGAAGTGTCTGGAGCCC
CTGGAACAGAAGCTGCAGGAGATCACTCGCTGCAAGTCCTCTGAGGAGAAGAAGCCTAGTGAGCTCAAGAGACTAGTGGA
AAGTCGCCGACAGCAGATCTTAAGAGAGTTTGAAGAGCTTCATAGGCGGCTGGATGAAGAGCAGCAGGTGTTGCTTTCAC
GACTGGAAGAAGAAGAACAGGACATTCTGCAGCGACTCCGAGAAAATGCTGCTCACCTTGGGGACAAGCGCCGGGACCTG
GCCCACTTGGCTGCTGAGGTGGAGGGCAAGTGCTTACAGTCGGGCTTCGAGATGCTTAAGGATGTCAAAAGTACCCTGGA
AAAATGTGAGAAGGTGAAGACCATGGAGGTGACTTCAGTATCCATAGAGCTGGAAAAGAACTTCAGCAATTTCCCCCGAC
AGTACTTTGCCCTAAGGAAAATCCTTAAACAGCTAATTGCGGATGTGACCCTGGATCCTGAGACGGCTCATCCTAACCTA
GTCCTGTCGGAGGATCGTAAGAGTGTCAAGTTCGTGGAGACAAGACTCCGGGATCTTCCTGATACACCAAGGCGTTTCAC
CTTCTACCCTTGCGTCCTGGCTACTGAGGGTTTCACCTCAGGTCGACACTACTGGGAGGTGGAGGTGGGCGACAAAACCC
ACTGGGCAGTGGGTGTGTGCCGGGACTCTGTGAGCCGAAAGGGCGAGTTGACTCCACTCCCTGAGACTGGTTACTGGCGG
GTGCGGCTATGGAATGGGGACAAATACGCAGCCACCACCACACCTTTTACCCCTTTGCACATCAAGGTGAAACCCAAGCG
GGTAGGCATATTCCTAGACTATGAGGCCGGCACACTGTCTTTCTACAATGTCACAGACCGCTCTCATATCTACACTTTCA
CTGATACTTTTACTGAGAAACTTTGGCCCCTCTTCTACCCGGGCATCCGGGCTGGACGGAAGAATGCTGCACCACTTACC
ATCAGACCCCCAACAGATTGGGAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 9 .56 RPM |
| SRP051959_skeletal_muscle | 10 .07 RPM |
| SRP051959_lymph_node | 11 .14 RPM |
| SRP051959_lung | 11 .09 RPM |
| SRP051959_liver | 7 .71 RPM |
| SRP051959_kidney | 10 .92 RPM |
| SRP051959_heart | 9 .75 RPM |
| SRP051959_colon | 9 .21 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000010938 | other_paralog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_477 | 98.05 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000020681 retrocopies