Parental gene: | PCGF5, ENSCJAG00000011001 |
| Aliases: | None |
| Description: | polycomb group ring finger 5 [Source:HGNC Symbol;Acc:28264] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 12:78007106..78135148(+) |
>ENSCJAG00000011001
ATGGCTACCCAAAGGAAACACTTGGTGAAAGATTTTAATCCTTATATTACCTGCTATATCTGTAAAGGGTATCTGATCAA
GCCAACCACAGTGACAGAATGCCTCCATACATTCTGTAAGACTTGTATTGTTCAGCACTTTGAAGATAGCAATGATTGCC
CAAGGTGTGGCAACCAGGTTCATGAGACAAATCCATTAGAAATGTTGAGGTTGGACAATACTTTAGAGGAAATTATATTT
AAGCTGGTCCCTGGACTCCGAGAACAAGAACTTGAGCGTGAATCTGAATTTTGGAAGAAAAATAAGCCTCAAGAAAATGG
ACAAGATGTTACTTCAAAAGTTGACAAACCGAAAGTAGATGAAGAAGGTGATGAAAATCAAGATTATCACAGAAGTGACC
CACAAATTGCTATCTGTCTAGATTGTTTACGAAATAATGGACAATCGGGGGACAATGTAGTAAAGGGTTTAATGAAGAAA
TTCATTCGGTGTTCTACACGTGTAACTGTTGGAACTATTAAAAAATTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTA
TGAGTTGGATGTGCTGTGCAATGGTGAAATTATGGGGAAGGATCATACTATGGAATTCATCTACATGACAAGATGGCGAC
TAAGAGGCGAAAACTTTCGGTGTCTGAACTGCTCAGCTTCGCAAGTCTGCTCTCAGGATGGCCCTTTGTATCAGTCGTAC
CCTATGGTATTGCAGTATCGACCAAGAATTGATTTTGGTTAG
ATGGCTACCCAAAGGAAACACTTGGTGAAAGATTTTAATCCTTATATTACCTGCTATATCTGTAAAGGGTATCTGATCAA
GCCAACCACAGTGACAGAATGCCTCCATACATTCTGTAAGACTTGTATTGTTCAGCACTTTGAAGATAGCAATGATTGCC
CAAGGTGTGGCAACCAGGTTCATGAGACAAATCCATTAGAAATGTTGAGGTTGGACAATACTTTAGAGGAAATTATATTT
AAGCTGGTCCCTGGACTCCGAGAACAAGAACTTGAGCGTGAATCTGAATTTTGGAAGAAAAATAAGCCTCAAGAAAATGG
ACAAGATGTTACTTCAAAAGTTGACAAACCGAAAGTAGATGAAGAAGGTGATGAAAATCAAGATTATCACAGAAGTGACC
CACAAATTGCTATCTGTCTAGATTGTTTACGAAATAATGGACAATCGGGGGACAATGTAGTAAAGGGTTTAATGAAGAAA
TTCATTCGGTGTTCTACACGTGTAACTGTTGGAACTATTAAAAAATTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTA
TGAGTTGGATGTGCTGTGCAATGGTGAAATTATGGGGAAGGATCATACTATGGAATTCATCTACATGACAAGATGGCGAC
TAAGAGGCGAAAACTTTCGGTGTCTGAACTGCTCAGCTTCGCAAGTCTGCTCTCAGGATGGCCCTTTGTATCAGTCGTAC
CCTATGGTATTGCAGTATCGACCAAGAATTGATTTTGGTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 105 .90 RPM |
| SRP051959_skeletal_muscle | 71 .00 RPM |
| SRP051959_lymph_node | 95 .34 RPM |
| SRP051959_lung | 91 .68 RPM |
| SRP051959_liver | 63 .05 RPM |
| SRP051959_kidney | 92 .38 RPM |
| SRP051959_heart | 111 .21 RPM |
| SRP051959_colon | 99 .98 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000001960 | within_species_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000036548 | within_species_paralog | 1 retrogene | |
| Equus caballus | ENSECAG00000016162 | possible_ortholog | 1 retrogene | |
| Microcebus murinus | ENSMICG00000012035 | ortholog_one2one | 5 retrogenes | |
| Procavia capensis | ENSPCAG00000007871 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2702 | 88.19 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000011001 retrocopies