Parental gene:

ENSCJAG00000036548

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:19931821..19945396(+)


>ENSCJAG00000036548
ATGCATCGAACGACCAGAATCAAGATCACTGAGCTAAATCCTCACCTGATGTGTGTGCTTTGTGGAGGGTACTTCATTGA
TGCCACAACCATAATAGAATGTCTACATTCCTTCTGTAAAACGTGTATTGTTCGTTACCTGGAGACCAGCAAGTATTGTC
CTATTTGTGATGTCCAAGTTCACAAAACCAGACCACTACTGAATATAAGATCAGATAAAACTCTTCAAGATATCGTGTAC
AAATTAGTTCCAGGGCTTTTCAAAAATGAAATGAAGAGAAGAAGGGATTTTTATGCAGCTCATCCTTCTGCTGATGCTGC
CAATGGCTCTAATGAAGATAGAGGAGAGGTTGCAGATGAAGATAAGAGAATTATAACTGATGATGAGATAATAAGCTTAT
CCATTGAATTCTTTGACCAGAACAGATTGGATCGAAAAGTAAACAAAGATAAAGAGAAATCTAAGGAGGAGGTGAATGAT
AAAAGATATTTACGATGCCCAGCAGCAATGACTGTGATGCACTTAAGAAAGTTTCTCAGAAGTAAAATGGACATACCTAA
TACTTTCCAGATTGATGTCATGTATGAGGAGGAACCGTTAAAGGATTATTATACACTAATGGATATTGCCTACATTTATA
CCTGGAGAAGGAATGGTCCACTTCCTTTGAAATACAGAGTTCGACCTACTTGTAAAAGAATGAAGATCAGTCACCAGAGA
GATGGACTGACCAATGCTGGAGAACTGGAAAGTGACTCTGGGAGTGACAAGGCCAACAGCCCAGCAGGAGGTATTCCCTC
CACCTCTTCTTGTTTGCCTAGCCCCAGTACTCCAGTGCAGTCTCCTCATCCACAGTTTCCTCACATTTCCAGTACTATGA
ATGGAACCAGCAACAGCCCCAGCGGTAACCACCAATCTTCTTTTGCCAGTAGACCTCGAAAATCATCAGTAAATGGGTCA
TCAGCAACTTCTTCTGGTTGA

Library Parental gene expression (RPM)
SRP051959_spleen 21 .91 RPM
SRP051959_skeletal_muscle 9 .28 RPM
SRP051959_lymph_node 16 .85 RPM
SRP051959_lung 13 .47 RPM
SRP051959_liver 8 .19 RPM
SRP051959_kidney 13 .13 RPM
SRP051959_heart 15 .54 RPM
SRP051959_colon 7 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000011962 ortholog_one2one 1 retrogene
retro_chof_709,
Callithrix jacchus ENSCJAG00000001960 within_species_paralog 1 retrogene
retro_cjac_707,
Callithrix jacchus ENSCJAG00000011001 within_species_paralog 1 retrogene
retro_cjac_2702,
Cavia porcellus ENSCPOG00000015427 ortholog_one2one 2 retrogenes
retro_cpor_1209, retro_cpor_546,
Gorilla gorilla ENSGGOG00000025243 ortholog_one2one 1 retrogene
retro_ggor_3025,
Loxodonta africana ENSLAFG00000016845 ortholog_one2one 1 retrogene
retro_lafr_591,
Macaca mulatta ENSMMUG00000000881 ortholog_one2one 1 retrogene
retro_mmul_2591,
Mus musculus ENSMUSG00000026739 ortholog_one2one 1 retrogene
retro_mmus_3710,
Oryctolagus cuniculus ENSOCUG00000005420 ortholog_one2one 1 retrogene
retro_ocun_489,
Tupaia belangeri ENSTBEG00000015631 ortholog_one2one 1 retrogene
retro_tbel_2369,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2437 90.31 88.65
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Download FASTA sequences of all ENSCJAG00000036548 retrocopies