Parental gene:

VPS37A, ENSCJAG00000011769

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:13:21048552..21100588(-)


>ENSCJAG00000011769
ATGAGCTGGCTCTTTCCCCTGACCAAGAGCGCCTCCTCCTCCGCAGCTGGGTCCCCCGGTGGCCTCACCAGCCTCCAGCA
ACAGAAGCAGCGCCTAATCGAGTCTCTCCGGAACTCACACTCCAGTATAGCTGAAATACAGAAAGATGTGGAATACAGAT
TGCCATTCACCATAAACAACCTGACAATTAACATTAATATATTGCTTCCTCCACAATTTCCTCAGGAAAAACCAGTGATC
AGTGTTTATCCACCGATACGACATCACTTAATGGATAAACAAGGAGTATATGTTACCTCTCCATTAGTAAACAATTTTAC
AATGCACTCAGATCTTGGAAAAATTATTCAGAGTTTGTTGGATGAGTTTTGGAAGAATCCTCCAGTTTTAGCTCCTACTT
CAACAGCATTTCCTTACCTATACAGTAACCCAAGTGGGATGCCTCCTTATGCTTCTCAGGGCTTTCCATTTCTTTCTCCA
TATTCACCACAAGAAGCAAACAGGAGTATCACTTCTTTATCTGTTGCTGACACGGTTTCTTCTTCAACAACAAGTCATAC
CACAGCCAAGCCAGCTGCTCCTTCATTTGGCGTCCTTTCAAACCTGCCATTACCTGTTCCTGCAATGGATGCCTCAGTAC
CGACAAGCCAAAATGGTTTTGGTTACAAGATGCCAGATGTCCCTGATGCATTTCCAGAACTCTCAGAACTAAGTGTGTCA
CAACTCACAGATATGAATGAACAAGAGGAGGTATTACTAGAACAGTTTCTCACTTTGCCTCAACTAAAACAAATTATTAC
TGACAAAGATGACTTAGTAAAAAGTATTGAGGAACTAGCAAGAAAAAATCTCCTTTTGGAGCCCAGCTTGGAAGCCAAAA
GGCAAACTGTTTTAGATAAGTATGAATTACTTACACAAATGAAGTCTACTTTTGAAAAGAAGATGCAAAGGCAGCATGAA
CTTAGTGAGAGCTGTAGTGCAAGTGCCCTACAGGCAAGATTGAAAGTAGCTGCACATGAAGCTGAGGAAGAATCTGATAA
TATTGCGGAAGACTTCTTGGAGGGAAAAATGGAAATAGATGATTTTCTCAGTTGCTTCATGGAAAAGAGAACAATTTGCC
ACTGTAGAAGAGCCAAGGAAGAGAAACTTCAGCAGGCAATTGCAATGCACAGCCAATTCCATGCTCCACTATAG

Library Parental gene expression (RPM)
SRP051959_spleen 21 .83 RPM
SRP051959_skeletal_muscle 21 .31 RPM
SRP051959_lymph_node 26 .32 RPM
SRP051959_lung 28 .71 RPM
SRP051959_liver 15 .21 RPM
SRP051959_kidney 19 .08 RPM
SRP051959_heart 19 .96 RPM
SRP051959_colon 19 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000682 ortholog_one2one 2 retrogenes
retro_chof_1257, retro_chof_2124,
Dipodomys ordii ENSDORG00000014879 ortholog_one2one 9 retrogenes
retro_dord_257, retro_dord_294, retro_dord_542, retro_dord_544, retro_dord_580, retro_dord_598, retro_dord_631, retro_dord_668, retro_dord_751,
Homo sapiens ENSG00000155975 ortholog_one2one 1 retrogene
retro_hsap_3256,
Gorilla gorilla ENSGGOG00000011650 ortholog_one2one 1 retrogene
retro_ggor_2217,
Nomascus leucogenys ENSNLEG00000002558 ortholog_one2one 1 retrogene
retro_nleu_2687,
Pongo abelii ENSPPYG00000018386 ortholog_one2one 2 retrogenes
retro_pabe_2699, retro_pabe_2821,
Pan troglodytes ENSPTRG00000020019 ortholog_one2one 1 retrogene
retro_ptro_2202,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1790 80.80 100.00
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Download FASTA sequences of all ENSCJAG00000011769 retrocopies