Parental gene:

AP2M1, ENSCJAG00000012998

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:5773254..5782454(+)


>ENSCJAG00000012998
ATGATTGGAGGCTTATTCATCTATAATCACAAGGGGGAGGTGCTCATCTCCCGAGTCTACCGAGATGACATCGGGAGGAG
TCATGCTGCTGACTCAGCTGTCTTCAGTTCCTCTGGGCCATTCCTGGGGGAGATGCTGGGAGGAAGCCGTGTGAACGCAG
TGGATGCCTTTCGGGTCAATGTTATCCATGCCCGGCAGCAGGTGCGCAGCCCCGTTACCAATATTGCACGCACCAGCTTC
TTCCACGTCAAGCGGTCCAACATCTGGCTGGCAGCAGTCACCAAGCAGAATGTCAACGCTGCCATGGTCTTCGAATTCCT
CTATAAGATGTGTGATGTGATGGCTGCCTACTTTGGCAAGATCAGCGAGGAAAACATCAAGAACAATTTTGTGCTCATAT
ATGAGCTGCTGGACGAGATTCTAGACTTTGGTTACCCACAGAATTCCGAGACAGGCGCGCTGAAAACCTTCATCACCCAG
CAGGGCATCAAGAGTCAGCATCAGACAAAAGAAGAGCAGTCACAGATCACCAGCCAGGTGACGGGGCAAATCGGCTGGCG
GCGAGAGGGTATCAAGTATCGCCGGAATGAGCTCTTCCTGGACGTGCTGGAGAGTGTGAACCTGCTCATGTCCCCACAAG
GTGAGGTGCTGAGCGCCCATGTGTCGGGCCGGGTGGTGATGAAGAGCTACCTGAGTGGGATGCCTGAATGCAAATTTGGG
ATGAATGACAAGATCGTCATTGAAAAACAGGGCAAAGGCACAGCTGATGAAACAAGCAAGAGCGGGAAGCAATCAATTGC
CATTGATGACTGCACCTTCCACCAGTGTGTACGACTCAGCAAGTTTGACTCTGAACGCAGCATCAGCTTCATCCCGCCAG
ATGGAGAGTTTGAGCTTATGAGGTATCGCACAACCAAGGACATCATCCTTCCTTTCCGGGTCATCCCGCTAGTGCGAGAA
GTGGGACGCACCAAACTGGAGGTCAAGGTGGTCATCAAGTCCAACTTTAAACCCTCACTGCTGGCTCAGAAGATTGAGGT
GAGGATCCCAACCCCCCTGAACACAAGTGGGGTGCAGGTGATCTGCATGAAGGGGAAGGCCAAGTACAAGGCCAGCGAGA
ACGCCATCGTATGGAAGATCAAGCGCATGGCAGGTATGAAGGAATCGCAGATCAGCGCAGAGATTGAGCTTCTGCCTACC
AACGACAAGAAGAAATGGGCTCGACCCCCAATTTCCATGAACTTTGAGGTGCCATTTGCACCCTCTGGCCTCAAGGTGCG
CTACTTGAAGGTGTTTGAACCGAAGCTGAACTACAGCGACCACGATGTCATCAAATGGGTGCGATACATTGGCCGAAGCG
GCATTTATGAAACTCGCTGCTAG

Library Parental gene expression (RPM)
SRP051959_spleen 45 .40 RPM
SRP051959_skeletal_muscle 36 .93 RPM
SRP051959_lymph_node 27 .33 RPM
SRP051959_lung 33 .56 RPM
SRP051959_liver 27 .51 RPM
SRP051959_kidney 42 .09 RPM
SRP051959_heart 36 .57 RPM
SRP051959_colon 28 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000014070 within_species_paralog 3 retrogenes
retro_cjac_1985, retro_cjac_2135, retro_cjac_3873,
Erinaceus europaeus ENSEEUG00000006073 possible_ortholog 1 retrogene
retro_eeur_47,
Echinops telfairi ENSETEG00000004759 possible_ortholog 1 retrogene
retro_etel_2124,
Macropus eugenii ENSMEUG00000002558 possible_ortholog 1 retrogene
retro_meug_43,
Tarsius syrichta ENSTSYG00000006101 possible_ortholog 1 retrogene
retro_tsyr_1873,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3340 91.53 100.00
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Download FASTA sequences of all ENSCJAG00000012998 retrocopies