Parental gene:

ENSCJAG00000013336

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:33732237..33759216(-)


>ENSCJAG00000013336
ATGGAAGGAGGCGGGGGAAGCGGCAACAAAACCACTGGGGGGTTGGCTGGCTTTTTCGGAGCCGGCGGAGCAGGTTACTC
GCACGCGGATTTGGCAGGCGTCCCGCTAACTGGTATGAACCCTCTGTCTCCTTATTTAAATGTGGATCCACGATACCTCG
TGCAGGATACAGATGAGTTTATTTTACCTACTGGAGCTAATAAAACCCGGGGCAGATTTGAGCTGGCCTTCTTTACGATT
GGAGGATGTTGCATGACAGGGGCTGCATTTGGTGCAATGAACGGTCTTCGGCTAGGATTGAAGGAAACCCAGAACATGGC
CTGGTCCAAACCAAGAAATGTACAGATTTTGAATATGGTGACTAGGCAAGGGGCACTTTGGGCTAATACTCTAGGTTCTC
TGGCTTTGCTCTATAGTGCATTTGGTGTCATTATTGAGAAAACACGAGGTGCAGAAGATGACCTAAACACAGTAGCAGCC
GGAACTATGACAGGCATGTTGTATAAATGTACAGGTGGTCTTCGAGGGATAGCACGAGGTGGTCTGACAGGACTAACACT
TACCAGCCTCTATGCACTATATAATAACTGGGAGCACATGAAAGGCTCCTTGCTCCAACAGTCACTCTGA

Library Parental gene expression (RPM)
SRP051959_spleen 11 .13 RPM
SRP051959_skeletal_muscle 29 .52 RPM
SRP051959_lymph_node 10 .23 RPM
SRP051959_lung 10 .79 RPM
SRP051959_liver 21 .27 RPM
SRP051959_kidney 19 .52 RPM
SRP051959_heart 16 .38 RPM
SRP051959_colon 11 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007501 ortholog_one2one 1 retrogene
retro_amel_1488,
Canis familiaris ENSCAFG00000029477 ortholog_one2one 1 retrogene
retro_cfam_329,
Choloepus hoffmanni ENSCHOG00000007073 ortholog_one2one 1 retrogene
retro_chof_797,
Cavia porcellus ENSCPOG00000019917 ortholog_one2one 2 retrogenes
retro_cpor_1013, retro_cpor_321,
Monodelphis domestica ENSMODG00000002661 ortholog_one2one 2 retrogenes
retro_mdom_1202, retro_mdom_860,
Mus musculus ENSMUSG00000013701 ortholog_one2many 1 retrogene
retro_mmus_2,
Oryctolagus cuniculus ENSOCUG00000000525 ortholog_one2many 1 retrogene
retro_ocun_73,
Otolemur garnettii ENSOGAG00000015393 ortholog_one2one 1 retrogene
retro_ogar_2627,
Ochotona princeps ENSOPRG00000005255 ortholog_one2one 2 retrogenes
retro_opri_520, retro_opri_920,
Procavia capensis ENSPCAG00000015914 ortholog_one2one 1 retrogene
retro_pcap_181,
Rattus norvegicus ENSRNOG00000019811 ortholog_one2many 3 retrogenes
retro_rnor_1804, retro_rnor_225, retro_rnor_661,
Sorex araneus ENSSARG00000010335 ortholog_one2one 1 retrogene
retro_sara_86,
Sus scrofa ENSSSCG00000025276 ortholog_one2one 1 retrogene
retro_sscr_404,
Ictidomys tridecemlineatus ENSSTOG00000007041 ortholog_one2one 1 retrogene
retro_itri_1043,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2965 86.51 59.81
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Download FASTA sequences of all ENSCJAG00000013336 retrocopies