Parental gene:

GABPA, ENSCJAG00000013817

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:21:29687603..29734037(+)


>ENSCJAG00000013817
ATGACTAAAAGAGAAGCAGAGGAGCTGATAGAAATTGAGATTGATGGAACAGAGAAGCCAGAGTGCACAGAAGAAAGCAT
TGTAGAACAAACCTACGCACCAGCTGAATGTGTAAGCCAGGCCATAGACATCAATGAACCAATAGGCAATTTAAAGAAAC
TGCTAGAACCAAGACTACAGTGTTCTTTGGATGCTCATGAAATTTGCCTGCAAGATATCCAGCTGGATCCAGAACGAAGT
TTATTTGACCAAGGAGTAAAGACAGATGGAACTGTACAGCTTAGTGTACAGGTAATTTCTTACCAAGGAATTGAACCCAA
GTTAAACATCCTTGAAATTGTTAAACCTGCGGACACTGTTGAAGTTGTTATTGATCCAGATGCCCACCATGCTGAATCAG
AAGCACATCTTGTTGAAGAAGCTCAAGTGATAACTCTTGATGGCACAAAACACATCACAACCATTTCAGATGAAACTTCA
GAACAAGTGACAAGATGGGCTGCTGCACTGGAAGGCTATAGGAAAGAACAAGAACGCCTTGGGATACCCTATGATCCCAT
ACAGTGGTCCACAGACCAAGTCCTGCATTGGGTGGTTTGGGTAATGAAGGAATTCAGCATGACTGACATAGACCTCACCA
CACTCAACATTTCTGGAAGAGAATTATGTAGTCTCAACCAAGAAGATTTTTTTCAGCGGGTTCCTCGGGGAGAAATTCTC
TGGAGTCATCTGGAACTTCTCCGAAAATATGTATTGGCAAGTCAGGAACAACAGATGAATGAAATAGTTACAATTGATCA
ACCTGTGCAAATTATTCCAGCATCAGTGCAATCTGCTACACCGACTACCATTAAAGTTATAAACAGTAGTGCAAAGGCAG
CTAAAGTACAAAGAGCTCCAAGGATTTCAGGAGAAGACAGAAGCTCACCTGGGAACAGAACAGGAAACAATGGCCAAATC
CAACTATGGCAGTTTTTGCTAGAACTTCTTACTGATAAGGATGCTCGAGACTGTATTTCTTGGGTTGGTGATGAAGGTGA
ATTTAAGCTAAACCAGCCTGAACTGGTCGCACAAAAATGGGGACAACGTAAAAATAAGCCTACGATGAACTATGAGAAAC
TCAGTCGTGCATTAAGATATTATTATGATGGGGACATGATTTGTACGGCTCAAGGAACGACATTTGTGAACGAGTTCCTC
TGTGACTTGAAGACTCTTATTGTATACAATGCATCACATTTCAACCGTTTGGTCACAGAGTGTGAACAGAAGAAACTTGC
AAAAATGCCCCTCCATGGAATTGCCCAGCCAGTCACAGCAGTAGCTCTGGCTACTGCTTCTCTGCAGACAGAAAAGGATA
ACTGA

Library Parental gene expression (RPM)
SRP051959_spleen 43 .59 RPM
SRP051959_skeletal_muscle 28 .45 RPM
SRP051959_lymph_node 38 .45 RPM
SRP051959_lung 42 .39 RPM
SRP051959_liver 33 .55 RPM
SRP051959_kidney 27 .22 RPM
SRP051959_heart 32 .15 RPM
SRP051959_colon 20 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000002592 other_paralog 1 retrogene
retro_cjac_1312,
Callithrix jacchus ENSCJAG00000008102 other_paralog 1 retrogene
retro_cjac_4220,
Dasypus novemcinctus ENSDNOG00000016059 ortholog_one2one 1 retrogene
retro_dnov_476,
Homo sapiens ENSG00000154727 ortholog_one2one 1 retrogene
retro_hsap_3737,
Ochotona princeps ENSOPRG00000009283 ortholog_one2one 1 retrogene
retro_opri_1174,
Pan troglodytes ENSPTRG00000013810 ortholog_one2one 1 retrogene
retro_ptro_2536,
Tursiops truncatus ENSTTRG00000004785 ortholog_one2one 1 retrogene
retro_ttru_154,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2487 77.10 57.27
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Download FASTA sequences of all ENSCJAG00000013817 retrocopies