Parental gene: | MTHFD2L, ENSCJAG00000013883 |
| Aliases: | None |
| Description: | Probable bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase 2 NAD-dependent methylenetetrahydrofolate dehydrogenase Methenyltetrahydrofolate cyclohydrolase [Source:UniProtKB/Swiss-Prot;Acc:F6ZFR0] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 3:120432169..120595066(-) |
>ENSCJAG00000013883
ATGACTGTGCCGGCCCGTGGCTTCTTGCTGCTCCGCGGCCGCCTGGGCCGAGTGCCGGCGCTGGGCAGGAGCACAGCACC
CCCCGTGAGAGCACCGGGAGGGCCCAGGAGCGCGTTCCGGGGCTTTCGGAGCAGCGGTGTGAGACATGAAGCCGTTATTA
TATCAGGAACCGAAATGGCTAAGCATATCCAGAAAGAAATAAAGCAAGGTGTGGAATCATGGATTTCCCTTGGAAACAGA
AGACCTCACCTCAGTATAATTTTAGTGGGAGATAATCCAGCAAGCCATACATACGTCAGGAATAAGATAAGAGCTGCCTC
TGCTGTAGGTATTTGTAGTGAGCTCATTCTAAAACCTAAGGATGTTTCTCAGGAAGAACTTTTGGACATAACAGATCAAT
TGAATATGGACCCAAGAGTCAGTGGTATATTAGTTCAGTTACCACTGCCAGACCATGTTGATGAACGAATGATATGCAAT
GGAATTGCCCCAGAAAAAGATGTTGATGGATTTCATATTATCAATATTGGAAGATTGTGCCTTGACCAGCATTCTCTCAT
ACCTGCCACTGCCAGTGCTGTTTGGGAAATAATAACAAGAACAGGAATTCAAACATTTGGAAAAAATGTGGTTGTGGCTG
GAAGATCCAAGAACGTAGGGATGCCCATTGCCATGCTTTTACACACTGATGGAGAGCATGAACGGCCAGGAGGTGATGCA
ACTGTGACAATAGCTCACAGATATACCCCCAAAGAACAGCTGAAGACTCATACACAACTGGCAGATGTTATCATAGTTGC
TGCAGGTATTCCAAAGTTGATTACATCTGATATGGTTAAAGAAGGTGCTGCTGTAATTGATGTGGGTATCAACTATGTCC
ATGATCCAGTGACAGGGAAGACAAAATTAGTTGGAGATGTGGACTTTGAAGCTGTTAAGAAGAAGGCTGGCTTTATAACT
CCAGTTCCAGGAGGTGTGGGACCCATGACAGTGGCAATGCTTCTGAAGAACACTCTTTTGGCAGCTAAAAAAATCATTTA
C
ATGACTGTGCCGGCCCGTGGCTTCTTGCTGCTCCGCGGCCGCCTGGGCCGAGTGCCGGCGCTGGGCAGGAGCACAGCACC
CCCCGTGAGAGCACCGGGAGGGCCCAGGAGCGCGTTCCGGGGCTTTCGGAGCAGCGGTGTGAGACATGAAGCCGTTATTA
TATCAGGAACCGAAATGGCTAAGCATATCCAGAAAGAAATAAAGCAAGGTGTGGAATCATGGATTTCCCTTGGAAACAGA
AGACCTCACCTCAGTATAATTTTAGTGGGAGATAATCCAGCAAGCCATACATACGTCAGGAATAAGATAAGAGCTGCCTC
TGCTGTAGGTATTTGTAGTGAGCTCATTCTAAAACCTAAGGATGTTTCTCAGGAAGAACTTTTGGACATAACAGATCAAT
TGAATATGGACCCAAGAGTCAGTGGTATATTAGTTCAGTTACCACTGCCAGACCATGTTGATGAACGAATGATATGCAAT
GGAATTGCCCCAGAAAAAGATGTTGATGGATTTCATATTATCAATATTGGAAGATTGTGCCTTGACCAGCATTCTCTCAT
ACCTGCCACTGCCAGTGCTGTTTGGGAAATAATAACAAGAACAGGAATTCAAACATTTGGAAAAAATGTGGTTGTGGCTG
GAAGATCCAAGAACGTAGGGATGCCCATTGCCATGCTTTTACACACTGATGGAGAGCATGAACGGCCAGGAGGTGATGCA
ACTGTGACAATAGCTCACAGATATACCCCCAAAGAACAGCTGAAGACTCATACACAACTGGCAGATGTTATCATAGTTGC
TGCAGGTATTCCAAAGTTGATTACATCTGATATGGTTAAAGAAGGTGCTGCTGTAATTGATGTGGGTATCAACTATGTCC
ATGATCCAGTGACAGGGAAGACAAAATTAGTTGGAGATGTGGACTTTGAAGCTGTTAAGAAGAAGGCTGGCTTTATAACT
CCAGTTCCAGGAGGTGTGGGACCCATGACAGTGGCAATGCTTCTGAAGAACACTCTTTTGGCAGCTAAAAAAATCATTTA
C
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 1 .07 RPM |
| SRP051959_skeletal_muscle | 2 .29 RPM |
| SRP051959_lymph_node | 0 .39 RPM |
| SRP051959_lung | 4 .15 RPM |
| SRP051959_liver | 28 .94 RPM |
| SRP051959_kidney | 1 .66 RPM |
| SRP051959_heart | 1 .28 RPM |
| SRP051959_colon | 1 .80 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000006627 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000017810 | within_species_paralog | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000009980 | ortholog_one2one | 4 retrogenes | |
| Tursiops truncatus | ENSTTRG00000002366 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1764 | 62.41 | 83.29 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000013883 retrocopies