Parental gene:

ENSCJAG00000017810

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:14:32638158..32655565(-)


>ENSCJAG00000017810
ATGCCTGCGCCTTCGCTCATGTCCGCGTTGGCTTCCCGACTGCTGCAGTCTGCGCAGAGATGCTCCCTCCGCCCTCGTTC
CTTCCACCTCGCGGCAGTTCGAAATGAAGCCGTGGTCATTTCTGGAAGGAAACTGGCCCAGCAGATCAAGCAGGAAGTAC
GGCAGGAGGTGGAAGAGTGGGTGGCCTCAGGCAATAAACAGCCACACCTGAGCGTGATCCTGGTTGGCGAGAATCCTGCA
AGTCACTCCTATGTCCTCAACAAAACCAGGGCAGCTGCAGATGTGGGAATCAACAGTGAGACAATTGTGAAATCAGCTTC
AATTTCAGAGGAAGAATTGTTGAATTTAATCAATAAACTGAATAATGATGATAATGTAGATGGCCTCCTTGTTCAGCTGC
CTCTTCCAGAGCATATTGATGAAAGAAAGATCTGCAATGCTGTTTCTCCAGACAAGGACGTTGATGGCTTTCATGTAATT
AATGTAGGGCGAATGTGTTTGGACCAGTATTCCATGTTACCAGCTACCCCATGGGGTGTGTGGGAAATAATTAAGCGAAC
TGGCATTCCAACCCTAGGGAAGAATGTGGTTGTGGCTGGAAGGTCAAAAAATGTTGGAATGCCCATTGCAATGTTACTGC
ACACAGATGGGGCACATGAACGTCCTGGAGGCGATGCCACTGTTACAATATCTCATCGATATACTCCCAAAGAGCAGTTG
AAGAAACATACAATTCTTGCAGATATTGTAATATCTGCTGCAGGCATTCCAAATCTGATCACAGCAGATATGATCAAGGA
AGGAGCAGCAGTTATTGATGTGGGAATAAATAGAGTTCATGATCCCGTAACTGCCAAACCCAAGTTGGTTGGAGATGTGG
ATTTTGAAGGAGTCAGACAAAAAGCTGGTTATATCACTCCAGTTCCTGGAGGTGTTGGCCCCATGACGGTGGCGATGCTA
ATGAAGAATACCATTATTGCTGCAAAAAAGGTGCTGAGGCTTGAAGAACGAGAAGTGCTGAAGCTTAAAGAGCTTGGAGT
AGCCAGTAATTAA

Library Parental gene expression (RPM)
SRP051959_colon 54 .49 RPM
SRP051959_heart 18 .86 RPM
SRP051959_kidney 29 .91 RPM
SRP051959_liver 8 .08 RPM
SRP051959_lung 23 .62 RPM
SRP051959_lymph_node 29 .09 RPM
SRP051959_skeletal_muscle 6 .38 RPM
SRP051959_spleen 41 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017345 ortholog_many2many 2 retrogenes
retro_amel_1098, retro_amel_1584,
Canis familiaris ENSCAFG00000008716 ortholog_many2many 1 retrogene
retro_cfam_580,
Callithrix jacchus ENSCJAG00000013883 within_species_paralog 1 retrogene
retro_cjac_1764,
Homo sapiens ENSG00000065911 possible_ortholog 5 retrogenes
retro_hsap_2732, retro_hsap_2817, retro_hsap_3002, retro_hsap_3309, retro_hsap_3874,
Macropus eugenii ENSMEUG00000013987 ortholog_one2many 4 retrogenes
retro_meug_1468, retro_meug_152, retro_meug_1577, retro_meug_2074,
Mustela putorius furo ENSMPUG00000007829 ortholog_one2many 3 retrogenes
retro_mputfur_1087, retro_mputfur_1397, retro_mputfur_1551,
Nomascus leucogenys ENSNLEG00000000326 possible_ortholog 5 retrogenes
retro_nleu_1196, retro_nleu_207, retro_nleu_2501, retro_nleu_595, retro_nleu_749,
Otolemur garnettii ENSOGAG00000009089 ortholog_one2many 1 retrogene
retro_ogar_3390,
Pongo abelii ENSPPYG00000012283 ortholog_one2one 3 retrogenes
retro_pabe_2271, retro_pabe_2729, retro_pabe_3077,
Pan troglodytes ENSPTRG00000012081 possible_ortholog 4 retrogenes
retro_ptro_1846, retro_ptro_1910, retro_ptro_2162, retro_ptro_2641,
Pteropus vampyrus ENSPVAG00000013948 ortholog_one2many 2 retrogenes
retro_pvam_1357, retro_pvam_1414,
Rattus norvegicus ENSRNOG00000010833 possible_ortholog 1 retrogene
retro_rnor_2170,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2225 68.57 59.14
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cjac_2568 91.96 96.00
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_cjac_3078 80.14 81.43
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000017810 retrocopies