Parental gene:

GPBP1, ENSCJAG00000015104

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:150383041..150456813(-)


>ENSCJAG00000015104
ATGGCGCAGCATGACTTTGCTCCAGCCTGGCTTAATTTCCCTACTCCACCATCATCAACAAAGTCGTCATTGAATTTTGA
GAAACATTCTGAAAACTTTGCATGGACAGAGAATCGTTATGATGTGAATCGTCGACGACACAACTCTTCAGATGGCTTTG
ATTCTGCTATTGGACGTCCTAATGGAGGTAACTTTGGAAGGAAAGAAAAAAATGGATGGCGTACACATGGAAGAAATGGT
ACGGAAAACATAAATCATCGTGGGGGATACCATGGTGGGAGTTCCCGCTCTCGTAGCAGTATTTTCCATTCTGGAAAAAG
CCAAGGACTACATGAAAACAACATACCTGACAATGAAACCGGGAGGAAAGAAGACAAGAGAGAACGCAAACAGTTTGAAG
CTGAGGATTTTCCGTCTTTAAATCCTGAATATGAGAGAGAACCAAATCACAATAAATCTTTAGCTGCAGGTGTGTGGGGC
CTACACGCCCAGACACACACATACCCAACCAAAAAAATCTCCCAAGCTCCTCTCTTAGAATATCCTCCGAATCCTAAATC
TAGAGCTCCAAGGATGCTGGTCATTAAGAAAGGTAATACAAAAGACTTACAGCTGTCTGGATTCCCAGTAGTAGGAAATC
TTCAGTCACAGCCAGTTAAGAATGGAACTGGTCCAAGTGTTTATAAAGGTTTAGTCCCTAAACCTGCTGCTCCACCTACA
AAACCTACACAATGGAAAAGCCAGACAAAAGAAAATAAAGTTGGAACTTCTTTCCCTCATGAATCTACATATGGTGTTGG
CAACTTTAATGCTTTTAAATCAACTGCCAAGAATTTTAGTCCATCAACAAATTCAGTGAAAGAGTGTAATCGTTCAAATT
CCTCTTCTCCTGTTGATAAACTTAATCAGCAGCCTCGTCTAACCAAACTGACACGAATGCGCACTGATAAGAAGAGTGAA
TTTTTGAAAGCATTGAAAAGAGACAGAGTAGAAGAGGAACATGAAGATGAAAGCCGTGCTGGCTCAGAGAAGGATGACGA
CTCATTTAATTTACATAACAGCAATAGTACTCACCAAGAAAGGGATATAAACCGAAACTTCGATGAAAATGAAATTCCTC
AAGAGAATGGCAATGCCTCGGTGATTTCCCAACAGATCATTCGATCTTCAACCTTCCCACAAACTGATGTTCTTTCAAGT
TCGCTTGAGGCAGAACACAGATTGTTAAAGGAAATGGGCTGGCAGGAAGACAGTGAAAATGATGAAACATGTGCTCCCTT
AACTGAGGATGAAATGAGAGAATTCCAAGTTATTAGTGAACAGTTACAGAAGAATGGTCTTAGAAAAAATGGTATTTTGA
AAAATGGCCTGATCTGTGACTTCAAGTTTGGACCCTGGAAGAACAGCACTTTCAAACCCACAGTTGAGAATGATGACACA
GAAACAAGTAGCAGTGACACATCAGATGACGACGATGTGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 88 .95 RPM
SRP051959_skeletal_muscle 46 .78 RPM
SRP051959_lymph_node 112 .67 RPM
SRP051959_lung 86 .80 RPM
SRP051959_liver 56 .30 RPM
SRP051959_kidney 68 .78 RPM
SRP051959_heart 50 .52 RPM
SRP051959_colon 61 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Microcebus murinus ENSMICG00000014678 ortholog_one2one 1 retrogene
retro_mmur_1198,
Myotis lucifugus ENSMLUG00000007462 ortholog_one2many 1 retrogene
retro_mluc_155,
Monodelphis domestica ENSMODG00000019540 ortholog_one2many 1 retrogene
retro_mdom_283,
Otolemur garnettii ENSOGAG00000013991 ortholog_one2one 1 retrogene
retro_ogar_1077,
Ictidomys tridecemlineatus ENSSTOG00000003057 ortholog_one2one 1 retrogene
retro_itri_1678,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3961 91.24 71.60
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Download FASTA sequences of all ENSCJAG00000015104 retrocopies