Parental gene:

TAF11, ENSCJAG00000015388

Aliases:None
Description:TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa [Source:HGNC Symbol;Acc:11544]
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:35754224..35766241(-)


>ENSCJAG00000015388
ATGGACGATGCCCGCGAGTCGCCCACAGACAAAGGCGGAGAGACAGGGGAGTCGGATGAGACCGTCGCTGCGCCCGGGGA
CCCGGGGGCTACCGACACGGATGGAATCCCAGAGGAAACTGATGGAGACGCAGATGCGGACCTAAAAGAAGCTGCAGCGG
AGGAAGGCGAGCTCAAGAGTCAGGATGTCTCAGATTTAACAGCAGTTGAAAGGGAAGACTCATCATTACTTACTCCTGCA
GCCAAAAAACTGAAAATAGATACCAAAGAAAAGAAAGAGAAGAAGCAGAAGGTAGATGAAGATGAGATTCAGAAGATGCA
AATCCTGGTTTCTTCTTTTTCTGAAGAGCAGCTGAACCGTTATGAAATGTATCGCCGCTCAGCTTTCCCTAAGGCAGCCA
TCAAAAGGCTGATCCAGTCTATCACTGGCACCTCTGTGTCTCAGAATGTTGTTATTGCTATGTCTGGCATTTCCAAGGTT
TTCGTCGGGGAGGTGGTAGAAGAAGCACTGGATGTGTGTGAGAAATGGGGAGAAATGCCACCACTGCAACCCAAACATAT
GAGGGAAGCTGTTAGAAGGTTAAAGTCAAAAGGACAGATCCCTAACTCGAAGCACAAAAAAATCATCTTCTTCTAG

Library Parental gene expression (RPM)
SRP051959_colon 5 .37 RPM
SRP051959_heart 5 .67 RPM
SRP051959_kidney 4 .84 RPM
SRP051959_liver 5 .00 RPM
SRP051959_lung 5 .16 RPM
SRP051959_lymph_node 5 .09 RPM
SRP051959_skeletal_muscle 7 .47 RPM
SRP051959_spleen 5 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000016887 ortholog_one2one 1 retrogene
retro_btau_218,
Cavia porcellus ENSCPOG00000015428 ortholog_one2many 1 retrogene
retro_cpor_629,
Dipodomys ordii ENSDORG00000009352 ortholog_one2many 1 retrogene
retro_dord_4,
Equus caballus ENSECAG00000016725 ortholog_one2one 1 retrogene
retro_ecab_83,
Felis catus ENSFCAG00000022931 ortholog_one2one 1 retrogene
retro_fcat_1628,
Homo sapiens ENSG00000064995 ortholog_one2one 15 retrogenes
retro_hsap_3139, retro_hsap_3140, retro_hsap_3141, retro_hsap_3142, retro_hsap_3143, retro_hsap_3144, retro_hsap_3145, retro_hsap_3146, retro_hsap_3147, retro_hsap_3148, retro_hsap_3149, retro_hsap_3295, retro_hsap_3296, retro_hsap_3297, retro_hsap_3298,
Loxodonta africana ENSLAFG00000011482 ortholog_one2many 1 retrogene
retro_lafr_1108,
Microcebus murinus ENSMICG00000014063 ortholog_one2one 1 retrogene
retro_mmur_1196,
Myotis lucifugus ENSMLUG00000001766 ortholog_one2one 1 retrogene
retro_mluc_87,
Nomascus leucogenys ENSNLEG00000008457 ortholog_one2one 29 retrogenes
retro_nleu_149, retro_nleu_151, retro_nleu_152, retro_nleu_1742, retro_nleu_1743, retro_nleu_2976, retro_nleu_2977, retro_nleu_2998, retro_nleu_3041, retro_nleu_3042, retro_nleu_3043, retro_nleu_3044, retro_nleu_3049, retro_nleu_3050, retro_nleu_3051, retro_nleu_3053, retro_nleu_3054, retro_nleu_3055, retro_nleu_3081, retro_nleu_3082, retro_nleu_3083, retro_nleu_3084, retro_nleu_3093, retro_nleu_3094, retro_nleu_3109, retro_nleu_3113, retro_nleu_3120, retro_nleu_3125, retro_nleu_3127,
Otolemur garnettii ENSOGAG00000008522 ortholog_one2one 2 retrogenes
retro_ogar_3055, retro_ogar_922,
Pongo abelii ENSPPYG00000016521 ortholog_one2one 1 retrogene
retro_pabe_200,
Pan troglodytes ENSPTRG00000018075 ortholog_one2one 9 retrogenes
retro_ptro_2123, retro_ptro_2124, retro_ptro_2125, retro_ptro_2126, retro_ptro_2127, retro_ptro_2128, retro_ptro_2129, retro_ptro_2130, retro_ptro_2977,
Tursiops truncatus ENSTTRG00000007855 ortholog_one2one 1 retrogene
retro_ttru_1063,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1342 92.45 100.00
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2. retro_cjac_1980 59.91 100.00
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3. retro_cjac_2310 91.47 99.53
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4. retro_cjac_2402 91.77 74.88
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5. retro_cjac_2657 94.79 99.53
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Download FASTA sequences of all ENSCJAG00000015388 retrocopies