Parental gene:

TAF11, ENSCPOG00000015428

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_15:37198718..37203876(+)


>ENSCPOG00000015428
ATGGACAGTGCCCGAGAGTCGCCCACCGACAAAGGTGGAGAGACAGGGGAGTCAGATGAGACCACCTCTGCCCCCGTAGT
CCCCGGGACTGCAGACACAGACGCAATCCCGGAGGAAACCGATGCAGACGGAGATGCGGACTTGAAAGAAGTCGTAGCGG
AGGAAGGCGAGCTCAAGAGTCAAGATGTCTCAGATTCCACACCAGGTGAAAGGGAAGACTCATTACTTGCTCCTGCAGCC
AAAAAACTGAAAATAGAGACCAAAGAAAAAAAGGAGAAAAAGCAAAAAGTAGATGAAGATGAGATTCAGAAGATGCAAAT
CCTGGTCTCTTCTTTCTCAGAGGAGCAGCTGAACCGCTACGAAATGTACCGCCGGTCAGCTTTCCCTAAGGCAGCCATTA
AAAGGCTGATCCAGTCCATCACCGGCACCTCTGTGTCCCAGAATGTGGTCATTGCCATGTCCGGTATCTCCAAGGTCTTT
GTTGGGGAGGTGGTAGAAGAAGCACTGGATGTGTGTGAGAAGTGGGGAGAGACCCCACCACTGCAACCCAAACATATGCG
GGAGGCTGTGCGGAGGCTCAAGTCCAAGGGGCAAATCCCCAACTCGAAGCACAAAAAAATCACCTTCTTC

Library Parental gene expression (RPM)
SRP017611_liver 4 .22 RPM
SRP017611_kidney 9 .11 RPM
SRP017611_brain 9 .20 RPM
SRP040447_lung 8 .52 RPM
SRP040447_skeletal_muscle 7 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000016887 ortholog_one2many 1 retrogene
retro_btau_218,
Callithrix jacchus ENSCJAG00000015388 ortholog_one2many 5 retrogenes
retro_cjac_1342, retro_cjac_1980, retro_cjac_2310, retro_cjac_2402, retro_cjac_2657,
Dipodomys ordii ENSDORG00000009352 ortholog_one2many 1 retrogene
retro_dord_4,
Equus caballus ENSECAG00000016725 ortholog_one2many 1 retrogene
retro_ecab_83,
Felis catus ENSFCAG00000022931 ortholog_one2one 1 retrogene
retro_fcat_1628,
Homo sapiens ENSG00000064995 ortholog_one2one 15 retrogenes
retro_hsap_3139, retro_hsap_3140, retro_hsap_3141, retro_hsap_3142, retro_hsap_3143, retro_hsap_3144, retro_hsap_3145, retro_hsap_3146, retro_hsap_3147, retro_hsap_3148, retro_hsap_3149, retro_hsap_3295, retro_hsap_3296, retro_hsap_3297, retro_hsap_3298,
Loxodonta africana ENSLAFG00000011482 ortholog_one2one 1 retrogene
retro_lafr_1108,
Microcebus murinus ENSMICG00000014063 ortholog_one2one 1 retrogene
retro_mmur_1196,
Myotis lucifugus ENSMLUG00000001766 ortholog_one2many 1 retrogene
retro_mluc_87,
Nomascus leucogenys ENSNLEG00000008457 ortholog_one2one 29 retrogenes
retro_nleu_149, retro_nleu_151, retro_nleu_152, retro_nleu_1742, retro_nleu_1743, retro_nleu_2976, retro_nleu_2977, retro_nleu_2998, retro_nleu_3041, retro_nleu_3042, retro_nleu_3043, retro_nleu_3044, retro_nleu_3049, retro_nleu_3050, retro_nleu_3051, retro_nleu_3053, retro_nleu_3054, retro_nleu_3055, retro_nleu_3081, retro_nleu_3082, retro_nleu_3083, retro_nleu_3084, retro_nleu_3093, retro_nleu_3094, retro_nleu_3109, retro_nleu_3113, retro_nleu_3120, retro_nleu_3125, retro_nleu_3127,
Oryctolagus cuniculus ENSOCUG00000002023 ortholog_one2one 1 retrogene
retro_ocun_447,
Otolemur garnettii ENSOGAG00000008522 ortholog_one2one 2 retrogenes
retro_ogar_3055, retro_ogar_922,
Pongo abelii ENSPPYG00000016521 ortholog_one2many 1 retrogene
retro_pabe_200,
Pan troglodytes ENSPTRG00000018075 ortholog_one2one 9 retrogenes
retro_ptro_2123, retro_ptro_2124, retro_ptro_2125, retro_ptro_2126, retro_ptro_2127, retro_ptro_2128, retro_ptro_2129, retro_ptro_2130, retro_ptro_2977,
Rattus norvegicus ENSRNOG00000024601 ortholog_one2one 1 retrogene
retro_rnor_709,
Tursiops truncatus ENSTTRG00000007855 ortholog_one2one 1 retrogene
retro_ttru_1063,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_629 66.12 56.67
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Download FASTA sequences of all ENSCPOG00000015428 retrocopies