Parental gene:

TRNT1, ENSCJAG00000015466

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:54973922..54993724(+)


>ENSCJAG00000015466
ATGAAGTTGCAGTCTCCAGAATTCCAGTCACTTTTCACAGAAGGATTGAAGAGTCTGACAGAATTATTTGTCAAAGAGAA
TCATGAATTAAGAATAGCAGGAGGAGCAGTGAGGGATTTATTAAATGGAGTAAAGCCTCAGGATGTAGATTTTGCCACCA
CTGCTACCCCTATTCAAATGAAGGAGATGTTTCAATCGGCTGGGATTCGGATGATAAACAACAGAGGAGAAAAGCACGGA
ACAATTACTGCCAGGCTTCATGAAGAAAATTTTGAGATTACTACACTACGGATTGATGTCACCACAGATGGAAGACATGC
TGAGGTAGAATTTACAACTGATTGGCAGAAAGATGCTGAACGCAGAGATCTCACTATAAATTCTATGTTTTTAGGTTTTG
ATGGCACTTTATTTGACTACTTTAATGGTTATGAAGATTTAAAAAATAAGAAAATTAGATTTGTTGGACAAGCTAAACAG
AGAATACAAGAGGATTATCTTAGAATTTTAAGATACTTCAGGTTTTATGGGAGAATTGTAGACAAACCTGGTGACCATGA
TCCTGAAACTTTGGAAGCAATTGCAGAAAATGCAAAAGGCTTGGCTGGAATCTCAGGAGAGAGGATTTGGGTGGAACTAA
AAAAAATTCTTGTTGGTAACCATGTAAATCATTTGATTCACCTTATCTATGATCTTGATGTGGCTTCTTATATAGGTTTA
CCTGCTAATGCAAGTTTAGAAGAATTTGACAAAGTCAGTAAAAATGTTGAAGGTTTTTCACCAAAGCCAATGACTCTTTT
GGCCTCATTATTCAAAGTACAAGATGATGTCACAAAATTGGATTTGAGGTTGAAGATCGCAAAAGAAGAGAAAAACCTTG
GCTTGTTTATAGTTAAAAATAGGAAAGATTTAATTAAAGCAGCAGATACTTCAGAGCCATTGAAACCCTATCAAGACTGC
ATTATAGATTCTAGGGAACCTGATGCAACTACTCGTGTATGTGAACTACTGAAGTACCAAGGAGAGCACTGTCTCCTCAA
GGAAATGCAGCAGTGGTCCATTCCTCCATTTCCTGTAAGTGGCCATGACATCAGAAAAGTGGGCATTTCTTCAGGAAAAG
AAATTGGGGCTCTATTACAACAGTTGCGAGAACAGTGGAAGAAAAGTGGTTACCAAATGGAAAAAGATGAACTTCTGAGT
TACATAAAGAAGACCTAA

Library Parental gene expression (RPM)
SRP051959_colon 15 .42 RPM
SRP051959_heart 21 .70 RPM
SRP051959_kidney 21 .34 RPM
SRP051959_liver 15 .44 RPM
SRP051959_lung 20 .66 RPM
SRP051959_lymph_node 22 .42 RPM
SRP051959_skeletal_muscle 17 .69 RPM
SRP051959_spleen 22 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000008837 ortholog_one2one 1 retrogene
retro_dnov_1635,
Echinops telfairi ENSETEG00000018177 ortholog_one2one 2 retrogenes
retro_etel_1871, retro_etel_905,
Homo sapiens ENSG00000072756 ortholog_one2one 2 retrogenes
retro_hsap_246, retro_hsap_2598,
Gorilla gorilla ENSGGOG00000015286 ortholog_one2one 1 retrogene
retro_ggor_300,
Nomascus leucogenys ENSNLEG00000003226 ortholog_one2one 1 retrogene
retro_nleu_856,
Petromyzon marinus ENSPMAG00000002236 ortholog_one2one 1 retrogene
retro_pmar_17,
Pongo abelii ENSPPYG00000013702 ortholog_one2one 3 retrogenes
retro_pabe_1916, retro_pabe_2721, retro_pabe_412,
Pan troglodytes ENSPTRG00000014564 ortholog_one2one 1 retrogene
retro_ptro_1522,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1512 79.77 83.21
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Download FASTA sequences of all ENSCJAG00000015466 retrocopies