Parental gene: | ENSCJAG00000015686 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 11:123539209..123544475(+) |
>ENSCJAG00000015686
ATGCGCTGCCTGACCACGCCCATGCTGCTTCGGGCCCTGGCCCAGGCTGCCCGTGCAGGACCTCCTGGTAGCCGGAGCCT
CCACAGCAGTGCAGTGGCAGCCACCTACAAGCATGTGAACATGCAGGAGCCCAAGATGGACATGAGGTCAGTGACTGACC
GGGCAGCCCAGACCCTGCTGTGGACCGAGCTCTTCCGAGGCCTGGCCATGACCCTGAGCTACCTGTTCCGGGAGCCGGCT
ACCATCAACTATCCGTTCGAGAAGGGCCCACTGAGCCCTCGCTTCCGTGGGGAGCATGCCCTGCGCCGGTACCCATCTGG
GGAGGAGCGCTGCATTGCCTGCAAGCTCTGCGAGGCCATCTGCCCCGCCCAGGCCATCACCATCGAGGCTGAGCCGAGAG
CTGACGGCAGCCGCCGGACCACTCGCTATGACATCGACATGACCAAGTGCATCTACTGCGGCTTCTGCCAGGAGGCCTGC
CCCGTGGACGCCATAGTTGAGGGCCCCAACTTCGAGTTCTCCACGGAGACGCACGAGGAGCTGCTGTACAACAAGGAGAA
GCTGCTCAACAACGGGGACAAGTGGGAGGCGGAGATCGCTGCCAACATCCAGGCCGACTACCTGTACCGCTGA
ATGCGCTGCCTGACCACGCCCATGCTGCTTCGGGCCCTGGCCCAGGCTGCCCGTGCAGGACCTCCTGGTAGCCGGAGCCT
CCACAGCAGTGCAGTGGCAGCCACCTACAAGCATGTGAACATGCAGGAGCCCAAGATGGACATGAGGTCAGTGACTGACC
GGGCAGCCCAGACCCTGCTGTGGACCGAGCTCTTCCGAGGCCTGGCCATGACCCTGAGCTACCTGTTCCGGGAGCCGGCT
ACCATCAACTATCCGTTCGAGAAGGGCCCACTGAGCCCTCGCTTCCGTGGGGAGCATGCCCTGCGCCGGTACCCATCTGG
GGAGGAGCGCTGCATTGCCTGCAAGCTCTGCGAGGCCATCTGCCCCGCCCAGGCCATCACCATCGAGGCTGAGCCGAGAG
CTGACGGCAGCCGCCGGACCACTCGCTATGACATCGACATGACCAAGTGCATCTACTGCGGCTTCTGCCAGGAGGCCTGC
CCCGTGGACGCCATAGTTGAGGGCCCCAACTTCGAGTTCTCCACGGAGACGCACGAGGAGCTGCTGTACAACAAGGAGAA
GCTGCTCAACAACGGGGACAAGTGGGAGGCGGAGATCGCTGCCAACATCCAGGCCGACTACCTGTACCGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 4 .66 RPM |
| SRP051959_skeletal_muscle | 35 .57 RPM |
| SRP051959_lymph_node | 6 .89 RPM |
| SRP051959_lung | 5 .32 RPM |
| SRP051959_liver | 12 .63 RPM |
| SRP051959_kidney | 12 .54 RPM |
| SRP051959_heart | 20 .94 RPM |
| SRP051959_colon | 7 .23 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000001217 | ortholog_one2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000011083 | ortholog_many2many | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000015013 | ortholog_one2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000017611 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000004193 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000013220 | ortholog_one2many | 1 retrogene | |
| Xenopus tropicalis | ENSXETG00000020882 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1088 | 92.45 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1652 | 87.26 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2237 | 90.48 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_3810 | 93.17 | 97.62 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000015686 retrocopies