RetrogeneDB ID: retro_mputfur_592

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896923.1:13010354..13010945(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NDUFS8
• Ensembl ID: ENSMPUG00000004193
• Aliases: None
• Description: NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) [Source:HGNC Symbol;Acc:7715]

Sequence

>retro_mputfur_592
CTGGCCCAGCCTGCCCTCACAGGGTATTCCACTGGCCACACCCTTGTGGGCATGACCTACAAGCTCTTGAACATGCAGAA
GCCATCATGAACATGAAGTCAGTGACTGGTAGGGCACTCAGGACCTGCTGTGGTCTGAGTTCTTCCGAGGCCTGGGCATG
ACCCTGAACTACCTGTTCCAGGAGCCCCTTGTCATCAACTACCCACTCAAGAAGGGCCAGCTGAGCCCACGCTTACAGGG
GGGCAGGGCTGCACGCATTGTGCCACTACCCATCTGGAGAGGAGCACTGCCTGCCTTGCCTATAAGATTTGTGCAGCTGT
TTGCCCCATCCAGGCCATCACCACCAAGGCTGAGCCCACCGCCAGTGGCAGCTGCCAGGCCACCCACTAAGACATGGATA
TGACCAAATGCATCTACTGTGGCTTCTGCCACATGGCCTGCCTCATGGACGCCAGCACCAAGGGTCCCAACTTTGAGTTC
CCCGCGGAGATACACAAGTTGCTGCTGTACAACAGGAGAAACTGCTCAGCAATGGGGGCAGGTGGGAAGATGAGATGTCC
CGCCAACATCCAGGCTGACGACCTTTATCGC

Alignment

ORF - retro_mputfur_592 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.04 %
• Parental protein coverage: 94.29 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  LAQAARAGQPAGRSLHGSSGAATYKFVNMQEPS-MDMKAVTDRAAQT-LLWTELIRGLGMTLSYLFREPA
          LAQ.A..G...G..L.G.....TYK..NMQ.PS.M.MK.VT.RA..T.LLW.E..RGLGMTL.YLF.EP.
Retrocopy LAQPALTGYSTGHTLVGM----TYKLLNMQKPS<MNMKSVTGRALRT<LLWSEFFRGLGMTLNYLFQEPL

Parental  TINYPFEKG-PLSPRFRG----EHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRADGSRRTTRYDI
          .INYP..KG.P..P...G.....H...........C.A.K.C.AVCP.QAIT..AEP.A.GS...T..D.
Retrocopy VINYPLKKG<PAEPTLTGGQGCTHCATTHLERSTACLAYKICAAVCPIQAITTKAEPTASGSCQATH*DM

Parental  DMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNK-EKLLSNGDKWEAEIA-ANIQADYLYR
          DMTKCIYCGFC..AC..DA...GPNFEF..E.H..LLYN..EKLLSNG..WE.E...ANIQAD.LYR
Retrocopy DMTKCIYCGFCHMACLMDASTKGPNFEFPAEIHKLLLYNR<EKLLSNGGRWEDEMS>ANIQADDLYR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_592 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_592 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000001217	2 retrocopies	retro_amel_366, retro_amel_613,
Canis familiaris	ENSCAFG00000011083	2 retrocopies	retro_cfam_1258, retro_cfam_129,
Callithrix jacchus	ENSCJAG00000015686	4 retrocopies	retro_cjac_1088, retro_cjac_1652, retro_cjac_2237, retro_cjac_3810,
Macropus eugenii	ENSMEUG00000015013	2 retrocopies	retro_meug_1148, retro_meug_926,
Myotis lucifugus	ENSMLUG00000017611	1 retrocopy	retro_mluc_1771,
Mustela putorius furo	ENSMPUG00000004193	1 retrocopy	retro_mputfur_592 ,
Otolemur garnettii	ENSOGAG00000013220	1 retrocopy	retro_ogar_2669,