Parental gene:

HOMER2, ENSCJAG00000015884

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:6:22530209..22637984(-)


>ENSCJAG00000015884
ATGGGAGAACAGCCCATCTTCACCACCCGAGCGCATGTCTTCCAGATCGACCCCAACACCAAGAAGAACTGGATGCCTGC
GAGCAAGCAGGCAGTCACTGTTTCCTACTTCTATGATGTCACAAGGAACAGCTATCGGATCATCAGTGTGGATGGAGCCA
AGGTGATCATCAACAGCACAATCACACCGAACATGACCTTCACCAAAACATCACAGAAGTTTGGGCAGTGGGCCGACAGC
AGAGCCAACACGGTGTTTGGTTTGGGGTTTTCTTCTGAGCAGCAGCTGACAAAGTTTGCAGAGAAATTCCAGGAGGTGAA
AGAAGCTGCCAAGATAGCCAAAGACAAGACCCAGGAGAAAATCGAGACCTCGAGTAATCATTCCCAGGAATCTGGGCGTG
AAACCCCATCTTCTACTCAGGCATCCAGTGTCAACGGGACGGACGATGAAAAGGCCTCTCACGCCGGTCCAGCTGACACA
CACCTGAAGTCTGAGAATGATAAGCTGAAGATTGCCTTGACACAGAGTGCTGCCAATGTAAAGAAGTGGGAGATTGAGCT
GCAGACCCTGCGGGAGAGCAATGCCCGACTGACTACGGCGCTGCAGGAGTCGGCAGCCAGCGTGGAGCAGTGGAAGAGGC
AGTTCTCCATCTGTCGCGATGAGAACGACCAGCTCCGCAACAAGATTGATGAGCTGGAAGAACAATGCAGTGAGATCAAC
AGAGAGAAGGAGAAGAACACACAGCTCAAGAGGAGGATCGAGGAGCTGGAGGCAGAGCTCCGAGAAAAGGAGACGGAGCT
GAAAGATCTCCGAAAACAAAGTGAAATCATACCTCAGCTCATGTCAGAGTGCGAATATGTCTCTGAGAAGCTAGAGGCAG
CAGAGAGAGACAATCAAAACCTGGAAGACAAAGTGCGTTCCTTAAAGACAGACATTGAGGAGAGCAAATATCGACAGCGC
CACCTGAAGGTGGAGTTGAAGAGCTTCCTGGAGGTGCTGGATGGGAAGATTGACGACTTGCACGACTTCCGCCGAGGCCT
CTCCAAGCTAGGCACCGATAACTAG

Library Parental gene expression (RPM)
SRP051959_colon 1 .89 RPM
SRP051959_heart 6 .65 RPM
SRP051959_kidney 10 .18 RPM
SRP051959_liver 33 .34 RPM
SRP051959_lung 8 .04 RPM
SRP051959_lymph_node 1 .92 RPM
SRP051959_skeletal_muscle 26 .36 RPM
SRP051959_spleen 1 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000014688 ortholog_many2many 1 retrogene
retro_cpor_35,
Equus caballus ENSECAG00000023619 ortholog_one2many 3 retrogenes
retro_ecab_1046, retro_ecab_661, retro_ecab_692,
Homo sapiens ENSG00000103942 ortholog_one2one 1 retrogene
retro_hsap_1468,
Macaca mulatta ENSMMUG00000008297 ortholog_one2one 1 retrogene
retro_mmul_2278,
Nomascus leucogenys ENSNLEG00000010953 ortholog_one2many 1 retrogene
retro_nleu_3002,
Pongo abelii ENSPPYG00000006735 ortholog_one2one 5 retrogenes
retro_pabe_1209, retro_pabe_1210, retro_pabe_1217, retro_pabe_3566, retro_pabe_3568,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3556 57.09 67.80
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2. retro_cjac_3614 57.89 67.80
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3. retro_cjac_3871 55.30 72.88
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Download FASTA sequences of all ENSCJAG00000015884 retrocopies