Parental gene: | HOMER2, ENSCJAG00000015884 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 6:22530209..22637984(-) |
>ENSCJAG00000015884
ATGGGAGAACAGCCCATCTTCACCACCCGAGCGCATGTCTTCCAGATCGACCCCAACACCAAGAAGAACTGGATGCCTGC
GAGCAAGCAGGCAGTCACTGTTTCCTACTTCTATGATGTCACAAGGAACAGCTATCGGATCATCAGTGTGGATGGAGCCA
AGGTGATCATCAACAGCACAATCACACCGAACATGACCTTCACCAAAACATCACAGAAGTTTGGGCAGTGGGCCGACAGC
AGAGCCAACACGGTGTTTGGTTTGGGGTTTTCTTCTGAGCAGCAGCTGACAAAGTTTGCAGAGAAATTCCAGGAGGTGAA
AGAAGCTGCCAAGATAGCCAAAGACAAGACCCAGGAGAAAATCGAGACCTCGAGTAATCATTCCCAGGAATCTGGGCGTG
AAACCCCATCTTCTACTCAGGCATCCAGTGTCAACGGGACGGACGATGAAAAGGCCTCTCACGCCGGTCCAGCTGACACA
CACCTGAAGTCTGAGAATGATAAGCTGAAGATTGCCTTGACACAGAGTGCTGCCAATGTAAAGAAGTGGGAGATTGAGCT
GCAGACCCTGCGGGAGAGCAATGCCCGACTGACTACGGCGCTGCAGGAGTCGGCAGCCAGCGTGGAGCAGTGGAAGAGGC
AGTTCTCCATCTGTCGCGATGAGAACGACCAGCTCCGCAACAAGATTGATGAGCTGGAAGAACAATGCAGTGAGATCAAC
AGAGAGAAGGAGAAGAACACACAGCTCAAGAGGAGGATCGAGGAGCTGGAGGCAGAGCTCCGAGAAAAGGAGACGGAGCT
GAAAGATCTCCGAAAACAAAGTGAAATCATACCTCAGCTCATGTCAGAGTGCGAATATGTCTCTGAGAAGCTAGAGGCAG
CAGAGAGAGACAATCAAAACCTGGAAGACAAAGTGCGTTCCTTAAAGACAGACATTGAGGAGAGCAAATATCGACAGCGC
CACCTGAAGGTGGAGTTGAAGAGCTTCCTGGAGGTGCTGGATGGGAAGATTGACGACTTGCACGACTTCCGCCGAGGCCT
CTCCAAGCTAGGCACCGATAACTAG
ATGGGAGAACAGCCCATCTTCACCACCCGAGCGCATGTCTTCCAGATCGACCCCAACACCAAGAAGAACTGGATGCCTGC
GAGCAAGCAGGCAGTCACTGTTTCCTACTTCTATGATGTCACAAGGAACAGCTATCGGATCATCAGTGTGGATGGAGCCA
AGGTGATCATCAACAGCACAATCACACCGAACATGACCTTCACCAAAACATCACAGAAGTTTGGGCAGTGGGCCGACAGC
AGAGCCAACACGGTGTTTGGTTTGGGGTTTTCTTCTGAGCAGCAGCTGACAAAGTTTGCAGAGAAATTCCAGGAGGTGAA
AGAAGCTGCCAAGATAGCCAAAGACAAGACCCAGGAGAAAATCGAGACCTCGAGTAATCATTCCCAGGAATCTGGGCGTG
AAACCCCATCTTCTACTCAGGCATCCAGTGTCAACGGGACGGACGATGAAAAGGCCTCTCACGCCGGTCCAGCTGACACA
CACCTGAAGTCTGAGAATGATAAGCTGAAGATTGCCTTGACACAGAGTGCTGCCAATGTAAAGAAGTGGGAGATTGAGCT
GCAGACCCTGCGGGAGAGCAATGCCCGACTGACTACGGCGCTGCAGGAGTCGGCAGCCAGCGTGGAGCAGTGGAAGAGGC
AGTTCTCCATCTGTCGCGATGAGAACGACCAGCTCCGCAACAAGATTGATGAGCTGGAAGAACAATGCAGTGAGATCAAC
AGAGAGAAGGAGAAGAACACACAGCTCAAGAGGAGGATCGAGGAGCTGGAGGCAGAGCTCCGAGAAAAGGAGACGGAGCT
GAAAGATCTCCGAAAACAAAGTGAAATCATACCTCAGCTCATGTCAGAGTGCGAATATGTCTCTGAGAAGCTAGAGGCAG
CAGAGAGAGACAATCAAAACCTGGAAGACAAAGTGCGTTCCTTAAAGACAGACATTGAGGAGAGCAAATATCGACAGCGC
CACCTGAAGGTGGAGTTGAAGAGCTTCCTGGAGGTGCTGGATGGGAAGATTGACGACTTGCACGACTTCCGCCGAGGCCT
CTCCAAGCTAGGCACCGATAACTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 1 .85 RPM |
| SRP051959_skeletal_muscle | 26 .36 RPM |
| SRP051959_lymph_node | 1 .92 RPM |
| SRP051959_lung | 8 .04 RPM |
| SRP051959_liver | 33 .34 RPM |
| SRP051959_kidney | 10 .18 RPM |
| SRP051959_heart | 6 .65 RPM |
| SRP051959_colon | 1 .89 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000014688 | ortholog_many2many | 1 retrogene | |
| Equus caballus | ENSECAG00000023619 | ortholog_one2many | 3 retrogenes | |
| Homo sapiens | ENSG00000103942 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000008297 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000010953 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000006735 | ortholog_one2one | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_3556 | 57.09 | 67.80 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3614 | 57.89 | 67.80 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3871 | 55.30 | 72.88 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000015884 retrocopies