Parental gene:

ENSCJAG00000016092

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:137810304..137826334(-)


>ENSCJAG00000016092
ATGATGGGCAGCAAGATGGCGTCTGCCAGTAGAGTCGTTCAGGTAGTCAAGCCACACACTCCATTAATAAGGTTTCCTGA
CAGAAGAGACAATCCTAAACCCAATGTATCAGAAGCTTTGAGATCAGCTGGGCTACCATCTCACTCTTCTGTAATTTCAC
AACATTCTAAGGGAAGTAAATCACCAGATTTGCTGATGTATCAGGGTCCACCAGACACTGCAGAAATAATAAAAACATTA
CCTCAGAAATACAGAAGGAAACTTGTGTCTCAAGAAGAAATTGAGTTTATCCAACGTGGAGGTCCTGAGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 4 .98 RPM
SRP051959_skeletal_muscle 13 .74 RPM
SRP051959_lymph_node 5 .00 RPM
SRP051959_lung 4 .07 RPM
SRP051959_liver 8 .71 RPM
SRP051959_kidney 11 .94 RPM
SRP051959_heart 12 .21 RPM
SRP051959_colon 6 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003161 ortholog_one2many 2 retrogenes
retro_amel_1838, retro_amel_565,
Dipodomys ordii ENSDORG00000007063 ortholog_many2many 1 retrogene
retro_dord_110,
Echinops telfairi ENSETEG00000019493 ortholog_one2many 2 retrogenes
retro_etel_1624, retro_etel_625,
Felis catus ENSFCAG00000031782 ortholog_one2many 1 retrogene
retro_fcat_724,
Homo sapiens ENSG00000134056 ortholog_one2many 2 retrogenes
retro_hsap_2750, retro_hsap_823,
Loxodonta africana ENSLAFG00000007932 ortholog_one2many 2 retrogenes
retro_lafr_1243, retro_lafr_598,
Monodelphis domestica ENSMODG00000019701 ortholog_one2many 1 retrogene
retro_mdom_1559,
Mus musculus ENSMUSG00000061474 ortholog_many2many 4 retrogenes
retro_mmus_105, retro_mmus_123, retro_mmus_3223, retro_mmus_753,
Nomascus leucogenys ENSNLEG00000004071 ortholog_one2many 4 retrogenes
retro_nleu_1545, retro_nleu_196, retro_nleu_2243, retro_nleu_257,
Oryctolagus cuniculus ENSOCUG00000005261 ortholog_one2many 2 retrogenes
retro_ocun_1057, retro_ocun_1109,
Otolemur garnettii ENSOGAG00000024260 ortholog_one2many 9 retrogenes
retro_ogar_1166, retro_ogar_1716, retro_ogar_2238, retro_ogar_2363, retro_ogar_2629, retro_ogar_3382, retro_ogar_711, retro_ogar_790, retro_ogar_869,
Ochotona princeps ENSOPRG00000011392 ortholog_one2many 1 retrogene
retro_opri_587,
Pongo abelii ENSPPYG00000015524 ortholog_one2many 3 retrogenes
retro_pabe_2219, retro_pabe_735, retro_pabe_917,
Pan troglodytes ENSPTRG00000016944 ortholog_one2many 4 retrogenes
retro_ptro_1858, retro_ptro_2038, retro_ptro_573, retro_ptro_690,
Pteropus vampyrus ENSPVAG00000010843 ortholog_one2many 1 retrogene
retro_pvam_174,
Rattus norvegicus ENSRNOG00000048862 ortholog_many2many 2 retrogenes
retro_rnor_1792, retro_rnor_2014,
Ictidomys tridecemlineatus ENSSTOG00000021863 ortholog_one2many 2 retrogenes
retro_itri_1039, retro_itri_938,
Tupaia belangeri ENSTBEG00000012048 ortholog_one2many 22 retrogenes
retro_tbel_1313, retro_tbel_1494, retro_tbel_1527, retro_tbel_224, retro_tbel_2404, retro_tbel_2661, retro_tbel_2755, retro_tbel_2762, retro_tbel_2924, retro_tbel_2934, retro_tbel_3239, retro_tbel_3240, retro_tbel_359, retro_tbel_3891, retro_tbel_3893, retro_tbel_3941, retro_tbel_4124, retro_tbel_4429, retro_tbel_4515, retro_tbel_4543, retro_tbel_4592, retro_tbel_702,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_45 97.09 100.00
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2. retro_cjac_3202 64.29 78.64
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Download FASTA sequences of all ENSCJAG00000016092 retrocopies