Parental gene: | POU2F1, ENSCJAG00000017095 |
| Aliases: | None |
| Description: | POU class 2 homeobox 1 [Source:HGNC Symbol;Acc:9212] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 18:38817141..39000329(-) |
>ENSCJAG00000017095
ATGAACAATCCGTCAGAAACCAGTAAACCATCTATGGAGAGTGGAGATGGCAACACAGGCACACAAACCAATGGTCTGGA
CTTTCAGAAGCAGCCTGTGCCTGTAGGAGGAGCGATCTCAACAGCCCAGGCGCAGGCTTTCCTTGGACATCTCCATCAGG
TCCAACTCGCTGGAACAAGTTTACAGGCTGCTGCTCAGTCTTTAAATTTACAGTCTAAATCTAATGAAGAATCGGGGGAT
TCACAGCAGCCAAGCCAGCCTTCCCAGCAGCCTTCAGTGCAGGCAGCCATTCCCCAAACCCAGCTTATGCTAGCTGGAGG
ACAGATAACTGGGCTTACTTTGACGCCCGCCCAGCAACAGTTACTACTCCAGCAGGCACAGGCACAGGCACAGCTGCTGG
CCGCTGCAGTACAGCAGCACTCTGCCAGCCAGCAGCATAGCGCTGCTGGGGCCACCATCTCCGCCTCTGCTGCCACACCC
ATGACGCAGATCCCCCTGTCTCAGCCCATACAGATCGCACAGGATCTTCAACAACTGCAACAGCTTCAACAGCAGAATCT
CAACCTGCAACAGTTTGTGTTGGTGCATCCAACCACCAATTTGCAGCCAGCGCAGTTTATCATCTCACAGACGCCCCAGG
GCCAGCAGGGTCTCCTGCAAGCGCAAAATCTTCTAACGCAACTACCTCAGCAAAGCCAAGCCAACCTCCTACAGTCGCAG
CCAAGCATCACCCTCACCTCCCAGCCAGCAACCCCAACACGCACAATAGCAGCAACCCCAATTCAGACACTTCCACAGAG
CCAGTCAACACCAAAGCGAATTGATACTCCCAGCTTGGAGGAGCCCAGTGACCTTGAGGAGCTTGAGCAGTTTGCCAAGA
CCTTCAAACAAAGACGAATCAAACTTGGATTCACTCAGGGTGATGTTGGGCTTGCTATGGGGAAACTATATGGAAATGAC
TTCAGCCAAACTACCATCTCTCGCTTTGAAGCCTTGAACCTCAGCTTTAAGAACATGTGCAAGTTGAAGCCACTTTTAGA
GAAGTGGCTAAATGATGCAGAGAACCTCTCATCTGATTCGTCCCTCTCCAGCCCAAGTGCCCTGAATTCTCCAGGAATTG
AGGGCTTGAGCCGTAGGAGGAAGAAACGCACCAGCATAGAGACCAACATCCGTGTGGCCTTAGAGAAGAGTTTCTTGGAG
AATCAAAAGCCTACCTCGGAAGAGATCACTATGATTGCTGATCAGCTCAACATGGAAAAAGAGGTGATTCGTGTTTGGTT
CTGTAACCGCCGCCAGAAAGAAAAAAGAATCAACCCACCAAGCAGTGGTGGGACCAGCAGCTCACCTATCAAAGCAATTT
TCCCCAGCCCGACTTCACTGGTGGCGACCACACCAAGCCTTGTGACTAGCAGTGCAGCAACTACCCTCACAGTCAGCCCT
GTCCTCCCTCTGACCAGTGCTGGTGTGACGAATCTTTCAGTTACAGGCACTTCAGACACCACCTCCAACAATACGGCAAC
CGTGATTTCCACAGCACCTCCGGCTTCCTCAGCAGTCACATCCCCCTCTCTGAGTCCCTCCCCTTCTGCCTCGGCCTCCA
CCTCCGAGGCATCTAGTGCCAGTGAGACCAGCACAACACAGACCACCTCCACTCCTTTGTCCTCCCCTCTTGGGACCAGC
CAAGTGATGGTGACAGCATCAGGTTTGCAAACAGCAGCAGCTGCTGCCCTTCAAGGAGCTGCACAATTGCCAGCAAATGC
TAGTCTTGCTGCCATGGCAGCTGCTGCAGGACTAAACCCAGGCCTGATGGCACCCTCACAGTTTGCGGCTGGAGGTGCCT
TACTCAGTCTGAATCCAGGGACCCTGAGCGGTGCTCTCAGCCCAGCTCTAATGAGCAACAGTACACTGGCAACTATTCAA
GCTCTTGCTTCTGGTGGCTCTCTTCCAATAACATCGCTCGATGCAACTGGGAACCTGGTATTTGCCAATGCAGGAGGAGC
CCCCAACATTGTGACTGCCCCTCTGTTCCTGAACCCTCAGAACCTCTCTCTGCTCACCAGCAACCCTGTTAGCTTGGTCT
CTGCTGCCGCAGCCTCTGCAGGGAACTCTGCACCTGTAGCCAGCCTTCACGCCACCTCCACCTCCGCTGAGTCCATCCAG
AACTCTCTCTTCACAGTGGCTTCTGCCAGCGGGGCTGCATCAACCACCACCACCGCCTCCAAGGCACAGTGA
ATGAACAATCCGTCAGAAACCAGTAAACCATCTATGGAGAGTGGAGATGGCAACACAGGCACACAAACCAATGGTCTGGA
CTTTCAGAAGCAGCCTGTGCCTGTAGGAGGAGCGATCTCAACAGCCCAGGCGCAGGCTTTCCTTGGACATCTCCATCAGG
TCCAACTCGCTGGAACAAGTTTACAGGCTGCTGCTCAGTCTTTAAATTTACAGTCTAAATCTAATGAAGAATCGGGGGAT
TCACAGCAGCCAAGCCAGCCTTCCCAGCAGCCTTCAGTGCAGGCAGCCATTCCCCAAACCCAGCTTATGCTAGCTGGAGG
ACAGATAACTGGGCTTACTTTGACGCCCGCCCAGCAACAGTTACTACTCCAGCAGGCACAGGCACAGGCACAGCTGCTGG
CCGCTGCAGTACAGCAGCACTCTGCCAGCCAGCAGCATAGCGCTGCTGGGGCCACCATCTCCGCCTCTGCTGCCACACCC
ATGACGCAGATCCCCCTGTCTCAGCCCATACAGATCGCACAGGATCTTCAACAACTGCAACAGCTTCAACAGCAGAATCT
CAACCTGCAACAGTTTGTGTTGGTGCATCCAACCACCAATTTGCAGCCAGCGCAGTTTATCATCTCACAGACGCCCCAGG
GCCAGCAGGGTCTCCTGCAAGCGCAAAATCTTCTAACGCAACTACCTCAGCAAAGCCAAGCCAACCTCCTACAGTCGCAG
CCAAGCATCACCCTCACCTCCCAGCCAGCAACCCCAACACGCACAATAGCAGCAACCCCAATTCAGACACTTCCACAGAG
CCAGTCAACACCAAAGCGAATTGATACTCCCAGCTTGGAGGAGCCCAGTGACCTTGAGGAGCTTGAGCAGTTTGCCAAGA
CCTTCAAACAAAGACGAATCAAACTTGGATTCACTCAGGGTGATGTTGGGCTTGCTATGGGGAAACTATATGGAAATGAC
TTCAGCCAAACTACCATCTCTCGCTTTGAAGCCTTGAACCTCAGCTTTAAGAACATGTGCAAGTTGAAGCCACTTTTAGA
GAAGTGGCTAAATGATGCAGAGAACCTCTCATCTGATTCGTCCCTCTCCAGCCCAAGTGCCCTGAATTCTCCAGGAATTG
AGGGCTTGAGCCGTAGGAGGAAGAAACGCACCAGCATAGAGACCAACATCCGTGTGGCCTTAGAGAAGAGTTTCTTGGAG
AATCAAAAGCCTACCTCGGAAGAGATCACTATGATTGCTGATCAGCTCAACATGGAAAAAGAGGTGATTCGTGTTTGGTT
CTGTAACCGCCGCCAGAAAGAAAAAAGAATCAACCCACCAAGCAGTGGTGGGACCAGCAGCTCACCTATCAAAGCAATTT
TCCCCAGCCCGACTTCACTGGTGGCGACCACACCAAGCCTTGTGACTAGCAGTGCAGCAACTACCCTCACAGTCAGCCCT
GTCCTCCCTCTGACCAGTGCTGGTGTGACGAATCTTTCAGTTACAGGCACTTCAGACACCACCTCCAACAATACGGCAAC
CGTGATTTCCACAGCACCTCCGGCTTCCTCAGCAGTCACATCCCCCTCTCTGAGTCCCTCCCCTTCTGCCTCGGCCTCCA
CCTCCGAGGCATCTAGTGCCAGTGAGACCAGCACAACACAGACCACCTCCACTCCTTTGTCCTCCCCTCTTGGGACCAGC
CAAGTGATGGTGACAGCATCAGGTTTGCAAACAGCAGCAGCTGCTGCCCTTCAAGGAGCTGCACAATTGCCAGCAAATGC
TAGTCTTGCTGCCATGGCAGCTGCTGCAGGACTAAACCCAGGCCTGATGGCACCCTCACAGTTTGCGGCTGGAGGTGCCT
TACTCAGTCTGAATCCAGGGACCCTGAGCGGTGCTCTCAGCCCAGCTCTAATGAGCAACAGTACACTGGCAACTATTCAA
GCTCTTGCTTCTGGTGGCTCTCTTCCAATAACATCGCTCGATGCAACTGGGAACCTGGTATTTGCCAATGCAGGAGGAGC
CCCCAACATTGTGACTGCCCCTCTGTTCCTGAACCCTCAGAACCTCTCTCTGCTCACCAGCAACCCTGTTAGCTTGGTCT
CTGCTGCCGCAGCCTCTGCAGGGAACTCTGCACCTGTAGCCAGCCTTCACGCCACCTCCACCTCCGCTGAGTCCATCCAG
AACTCTCTCTTCACAGTGGCTTCTGCCAGCGGGGCTGCATCAACCACCACCACCGCCTCCAAGGCACAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 10 .19 RPM |
| SRP051959_skeletal_muscle | 6 .49 RPM |
| SRP051959_lymph_node | 11 .44 RPM |
| SRP051959_lung | 7 .92 RPM |
| SRP051959_liver | 2 .51 RPM |
| SRP051959_kidney | 7 .17 RPM |
| SRP051959_heart | 6 .07 RPM |
| SRP051959_colon | 6 .39 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000019789 | within_species_paralog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000015231 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1344 | 86.34 | 55.05 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000017095 retrocopies