RetrogeneDB ID: retro_mluc_780

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429775:1792296..1793512(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000027168
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: POU2F1
• Ensembl ID: ENSMLUG00000015231
• Aliases: None
• Description: None

Sequence

>retro_mluc_780
GGGCTTACTTTGATGCTAGCCCAGCAGCAGTTGCTCCTGCAGCAGGCACAGGCACAGCTGTTGGCCGCTGCGGTACAGCA
GCACTCCACCAGCCAACCGCACAGTGCTGCCGGGGCCACCATCTCTGCCTCCACCGCCACACCCATGACGCAGATCCCGC
TGTCTCAGACCATACAGATCAAACAGGATCTGCAACAACTACAGCAACTTCAGCAGCAGAATCTCAACCTGCAACAGTTC
GTGCTGGTACATCCAACCACCAACCTGCAGCCAGCACAGTTCATCATCGCACAGACGCCCCAGGGCCAGCAGGGTCTCCT
GCAAGCGCAAAATCTTTTAACGCAACTACCTCAGCAAAGCCAAGCCAACCTCCTACAGTCGCAGCCAAGCATCACCCTCA
CTTCCCAGCCAGCAATCCCAACACGCACAATAGCTGCAACCCCAATTCAGACACTTCCACAGAACCAGGGAACACCAAAG
CGAATTGACACTCCCAGCTTGGAGGAGCCCAGTGACCTTGAGGAGCTTGAGCAGTTTGCCAAGACCTTCAAACAAAGACG
AATCCAACTTCGATTTACTCAGGGCAATGTTGGGCTTGCGATGGGTAAACTGTATGGAAATGACTTCAGCCAAACTACCA
TCTCTCGCTTTGAAGCCTTGAAACTCAGCTTTAAGAACATGTGCAAGTTAAAGCCACTTTTGGAGAAGTGGCTCAGTGAT
GCAGAGAACCTCTCGTCAGATTCAGCGCTCTCCAGCCCAAGTGCCCTCAATTCTCCAGGGCAGGGAATCGAGGGCTTGAA
CCGTAGGAGGAGGAAACGCACCAGCATAGAGACCAACATCCGTGTGGCCTTAGAGAAGAGTTTCCTGGAGAATCAAAAGC
CTACCTCAGAAGAGATCACCATGATTGCTGAGCAGCTCAACATGGAGAGGGAGGTAATTCGAGTTTGGTTTTGTAACCGC
CGCCAGAAGGAAAAAAAGGATCAACCCACCCAGCAGTGGTGGGACCAGCAGCTCGCCTATCAAAGCAATTTTCCCCAGCC
CGACTTCCCTGGTGGCGACCACGCCAAGCCTTGTGACCAGCAGTGCAGCAACTACCCTCACAGTCAACCCCATCCTCCCT
CTGACCAGCGCTGCAGTAACCAACCTCTCTGTTGCCGAGGTGCCTTACTCAGTCTCAACCCAGGGACCGACCATGGGCGG
TGCTCTCAGCCCAGCT

Alignment

ORF - retro_mluc_780 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.2 %
• Parental protein coverage: 56.06 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GLTLTPAQQQLLLQQAQAQAQLLAAAVQQHSASQQHSAAGATISASAATPMTQIPLSQPIQIAQDLQQLQ
          GLTL..AQQQLLLQQAQAQ..LLAAAVQQHS.SQ.HSAAGATISAS.ATPMTQIPLSQ.IQI.QDLQQLQ
Retrocopy GLTLMLAQQQLLLQQAQAQ--LLAAAVQQHSTSQPHSAAGATISASTATPMTQIPLSQTIQIKQDLQQLQ

Parental  QLQQQNLNLQQFVLVHPTTNLQPAQFIISQTPQGQQGLLQAQNLLTQLPQQSQANLLQSQPSITLTSQPA
          QLQQQNLNLQQFVLVHPTTNLQPAQFII.QTPQGQQGLLQAQNLLTQLPQQSQANLLQSQPSITLTSQPA
Retrocopy QLQQQNLNLQQFVLVHPTTNLQPAQFIIAQTPQGQQGLLQAQNLLTQLPQQSQANLLQSQPSITLTSQPA

Parental  TPTRTIAATPIQTLPQSQATPKRIDTPSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGND
          .PTRTIAATPIQTLPQ.Q.TPKRIDTPSLEEPSDLEELEQFAKTFKQRRI.L.FTQG.VGLAMGKLYGND
Retrocopy IPTRTIAATPIQTLPQNQGTPKRIDTPSLEEPSDLEELEQFAKTFKQRRIQLRFTQGNVGLAMGKLYGND

Parental  FSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAENLSSDSALSSPSALNSPGQGIEGLNRRRKKRTSIET
          FSQTTISRFEAL.LSFKNMCKLKPLLEKWL.DAENLSSDSALSSPSALNSPGQGIEGLNRRR.KRTSIET
Retrocopy FSQTTISRFEALKLSFKNMCKLKPLLEKWLSDAENLSSDSALSSPSALNSPGQGIEGLNRRRRKRTSIET

Parental  NIRVALEKSFLENQKPTSEEITMIAEQLNMEKEVIRVWFCNRRQKE-KRINPPSSGGTSSSPIKAIFPSP
          NIRVALEKSFLENQKPTSEEITMIAEQLNME.EVIRVWFCNRRQKE.KRINPPSSGGTSSSPIKAIFPSP
Retrocopy NIRVALEKSFLENQKPTSEEITMIAEQLNMEREVIRVWFCNRRQKE>KRINPPSSGGTSSSPIKAIFPSP

Parental  TSLVATTPSLVTSSAATTLTVNPVLPLTSAAVTNLSVTGTTDTTANNTATVISTAPPA
          TSLVATTPSLVTSSAATTLTVNP.LPLTSAAVTNLSV............T......PA
Retrocopy TSLVATTPSLVTSSAATTLTVNPILPLTSAAVTNLSVAEVPYSVSTQGPTMGGALSPA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_780 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000017095	1 retrocopy	retro_cjac_1344,
Myotis lucifugus	ENSMLUG00000011028	3 retrocopies	retro_mluc_1465, retro_mluc_2382, retro_mluc_515,
Myotis lucifugus	ENSMLUG00000015231	1 retrocopy	retro_mluc_780 ,