Parental gene:

SCD, ENSCJAG00000017338

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:87628936..87650413(+)


>ENSCJAG00000017338
CAGCCTGGCCCCGCACCGCAGGTCCAGATCTCTAGCTCCTATACCACCACCACCACCATCACAGCGCCTCCCTCCAGGGT
CCCGCAGAATGGAGGAGATAAGTTGGAGAAGACGCCCCTCTATTTGGAAGAAGACATTCGCCCAGATATGAAAGATGATA
TATATGACCCCACCTACAAGGATAAGGAAGGCCCAAGGCCCAAGGTTGAGTATGTCTGGAGAAACATCATCCTGATGTCT
CTGCTACACTTGGGCGCCCTGTATGGGATCATTTTGATTCCTACCTGCAAGTTCTACACCTGGCTTTGGGGGTTATTCTA
CTATTTTGTCAGTGCCCTGGGCATAACAGCGGGAGTTCATCGCCTGTGGAGCCACCGAACTTACAAAGCTCGGCTGCCCC
TGCGGGTCTTTCTGATCATTGCCAACACAATGGCATTCCAGAATGATGTCTTTGAATGGGCTCGTGACCACCGTGCCCAC
CACAAGTTTTCAGAAACAGATGCTGATCCTCATAATTCCCGACGTGGCTTTTTCTTTTCTCACGTGGGCTGGCTGCTTGT
GCGCAAACACCCAGCTGTCAAAGAGAAGGGCGGTACGCTGGACTTGTCTGACCTAAAAGCTGAGAAACTGGTGATGTTCC
AGAGGAGGTACTACAAACCTGGTGTGCTGCTGATGTGCTTCATCCTGCCCACACTTGTGCCCTTTTATTTCTGGGGTGAA
ACTTTTCAACACAGCTTGTACGTTGCCACTTTCTTGCGATATGCTGTAGTGCTTAATGCCACCTGGCTGGTGAACAGCGC
TGCCCACCTCTACGGATATCGTCCTTATGACAAGAACATTAGCCCCCGGGAGAACATCCTGGTTTCCTTTGGAGCTGTGG
GTGAGGGCTTCCACAACTACCACCACTCCTTTCCCTATGACTACTCTGCCAGTGAGTACCGCTGGCACATCAACTTAACC
ACATTCTTCATTGATTGCATGGCTCTCCTCGGTCTGGCCTACGACCGGAAGAAAGTATCCAAGGCCGCCATCTTGGCCAG
GATTAAAAGAACTGGGGATGGAAGCTACAAGAGTGGCTGA

Library Parental gene expression (RPM)
SRP051959_colon 29 .60 RPM
SRP051959_heart 126 .52 RPM
SRP051959_kidney 22 .14 RPM
SRP051959_liver 2504 .81 RPM
SRP051959_lung 49 .47 RPM
SRP051959_lymph_node 4 .09 RPM
SRP051959_skeletal_muscle 41 .34 RPM
SRP051959_spleen 12 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000099194 ortholog_one2one 1 retrogene
retro_hsap_1733,
Macaca mulatta ENSMMUG00000010817 ortholog_one2one 1 retrogene
retro_mmul_1636,
Pongo abelii ENSPPYG00000002566 ortholog_one2one 1 retrogene
retro_pabe_1545,
Pan troglodytes ENSPTRG00000002847 ortholog_one2one 1 retrogene
retro_ptro_3058,
Drosophila melanogaster FBgn0086687 ortholog_many2many 1 retrogene
retro_dmel_78,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1077 91.46 55.15
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2. retro_cjac_2348 91.11 99.72
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Download FASTA sequences of all ENSCJAG00000017338 retrocopies