Parental gene:

RPN1, ENSCJAG00000017529

Aliases:None
Description:ribophorin I [Source:HGNC Symbol;Acc:10381]
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:68357910..68410227(+)


>ENSCJAG00000017529
ATGGAGGCGCTAGCCGCCTGCCTGTTTTTGCTCCTGTGGTTTGGGGCCTGGGCCCCCGCACCGGGCAGCGCCTCCTCCGA
GGCACCCTCGCTGATCAACGAGGAGGTGAAGCGCACAGTGGACCTAAGCAGCCACCTGGCAAAGGTGACGGCGGAGGTGG
TCCTGGCGCACCTGGGCAGCAGCTCCACGTCCCGAGCTACCTCTTTCCTTCTGGCTTTGGAGCCCGACCTCGAGGTTCGG
CTGGCGCATCTAGGCGTGCAGGTGAAGGGAGAAGATGAGGAAGAGAACAATTTGGAAGTACGTGAAACCAAAATTAAGGG
TAAAAGTGGGAAATTCTTCACAGTCAAGCTCCCAGTTGCTCTTGATCCTGGGGCCAAGATTTCAGTCATTGTGGAGACAG
TCTACACCCATGTGCTTCAGCCGTATCCAACCCAGATCACTCAGTCAGAGAAACAGTTTGTGGTGTTTGAGGGGAACCAT
TATTTCTACTCTCCCTATCCAACGAAGACACAAACCATGCGTGTGAAGCTTGCCTCCCGAAATGTGGAGAGCTACACCAA
GCTGGGGAACCCCACGCGCTCTGAGGACCTGCTGGATTATGGGCCTTTCAGAGATGTCCCTGCCTATAGTCAGGATACTT
TTAAAGTACATTATGAGAACAACAGTCCTTTCCTGACCATCACCAGCATGACTCGAGTCATTGAAGTCTCTCACTGGGGT
AATATTGCTGTGGAAGAAAATGTGGACTTGAAGCACACAGGGGCTGTGCTTAAGGGGCCTTTCTCACGCTATGATTACCA
GAGACAGCCAGATAGTGGAATATCCTCCATTCGTTCTTTTAAGACTATCCTTCCTGCTGCTGCCCAGGATGTTTATTACC
GGGATGAGATTGGCAATGTTTCCACCAGTCACCTCCTTATTTTGGATGACTCTGTAGAGATGGAAATCCGGCCTCGCTTC
CCTCTATTTGGCGGGTGGAAGACCCATTACATCGTTGGCTACAATCTCCCAAGCTATGAGTACCTCTATAATTTGGGTGA
CCAGTATGCACTGAAGATGAGGTTTGTGGACCATGTGTTTGATGAACAAGTGATAGATTCTCTGACTGTGAAGATCATCC
TGCCTGAAGGAGCGAAGAACATTGAAATTGATAGTCCCTATGAAATCAGCCGTTCCCCAGATGAGCTGCACTACACCTAT
CTGGACACGTTCGGCCGCCCTGTGATTGTTGCCTACAAGAAAAATCTGGTAGAACAGCACATTCAGGACATTGTGGTCCA
CTACACATTCAACAAGGTGCTTATGCTGCAGGAGCCCCTGCTCGTGGTGGCAGCCTTCTACATCCTGTTCTTCACCGTCA
TAATCTATGTCCGGCTGGACTTCTCCATCACCAAGGATCCGGCCGCAGAAGCCAGGATGAAGGTAGCCTGCATCACAGAG
CAGGTCTTGACCCTGGTCAACAAGAGAATAGGCCTTTACCGTCACTTTGATGAGACTGTCAACAGGTATAAGCAATCCCG
GGACATCTCCACCCTCAACAGTGGCAAGAAGAGCCTGGAGACTGAACACAAGGCCTTGACCAGTGAGATTGCACTGCTGC
AGTCCAGGCTGAAGACAGAGGGCTCTGATCTGTGCGACAGAGTAAGCGAAATGCAGAAGCTGGATGCACAGGTCAAGGAG
CTGGTGCTGAAGTCGGCGGTGGAGGCTGAGCGCCTGGTGGCTGGCAAGCTCAAGAAAGACACGTACATCGAGAATGAGAA
GCTCATCTCAGGAAAGCGCCAGGAGCTGGTCACCAAGATTGACCACATCCTGGATGCCCTGTAG

Library Parental gene expression (RPM)
SRP051959_spleen 96 .22 RPM
SRP051959_skeletal_muscle 50 .45 RPM
SRP051959_lymph_node 83 .42 RPM
SRP051959_lung 82 .39 RPM
SRP051959_liver 152 .60 RPM
SRP051959_kidney 102 .34 RPM
SRP051959_heart 49 .76 RPM
SRP051959_colon 89 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005191 ortholog_one2many 1 retrogene
retro_btau_123,
Myotis lucifugus ENSMLUG00000017213 ortholog_one2one 1 retrogene
retro_mluc_721,
Oryctolagus cuniculus ENSOCUG00000011098 ortholog_one2one 1 retrogene
retro_ocun_899,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_601 93.95 92.42
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Download FASTA sequences of all ENSCJAG00000017529 retrocopies