RetrogeneDB ID: retro_mluc_721

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429772:5919388..5920359(-)
• Located in intron of: ENSMLUG00000005113

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RPN1
• Ensembl ID: ENSMLUG00000017213
• Aliases: None
• Description: None

Sequence

>retro_mluc_721
CCATCGCCTGCTTCTGCTCCTACTTCTTAGGTGCCACTGGTCAGCAAGCACATGGAGTGCACAATGGACCTGAGCAGACA
CCTGGACACGGTGACTGCCAAGGTGATTCTGATGCACCCAAGTGACAGCTTCACATCTCACGCTGCCTCCTTTCTTCTGG
CCTCGGAGCCAGAGCTCAAAACACAGCTGGTGCACCTCTGTCTATATGTGAGGGGAAATGGTGAGGAAGAGAACAACTCT
GGAAGTACGAGAAACCAAAGTTAAGGGTAAAAGTGGAGATTCTTAATGGTGAAGCTCCCAGTGCATTTGATCTGGGGCCA
AGATTTCAGTCATTGTGGAAACAGTTTATACCTATGTGCTCCAGCCATATTCAACCCAGATGACTCAATCAGAGAAAACA
GTTTGTGGTGTCTGAGGCCAACCATTATTTGTACACTCCCTATCCAACAAAGACACAATGCATGTGAAGTTTGCCTCCCA
AAATGTTAAGAGGTACACCAAGTTGGGGAACTCCACATGGTTTGAAAACCTCCTAGATTATGGACCTTTTAGAGATACCC
CTGCCTATAGTCAGGATGCTATTCAAGTACATGATGAGAACAACAGCCCTTTCCTTATTATCACCAGCATGATGCAACTC
ATTAAGGTTTCTCACTGGGATAATATTGCTGCAGAAGCAAATGTGGACTTGAAGCACACCGGGCTGTACTTGGGGCCTTT
TCCACACTATGATGACCAGAGATAGCCAGAGAGTGGTTTATCCTCCATTCGTTCTTTTAAGACCATCCTCCCTGCTGATG
CCCAGGATGTTATTACCAGGATGAGATTGGCATTGTTTTCGTTAGCCACGTCCTTATTTTGGATGACTCCATGGAGATAG
AAATATAGCCTTGCTTCCCTCTTTTGTTGGGTGAAAGACCCATTACATTGATGACTACAACCTCTCAAGCTATGATTTGG
AGTATGCATTG

Alignment

ORF - retro_mluc_721 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 63.58 %
• Parental protein coverage: 53.78 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 8

Retrocopy - Parental Gene Alignment:

Parental  PAPGRASPEAPPLVNEDVKRTVDLSSHLAKVTVEMVLAHPGGSSTARATSFLLALEPELEARLAHLGVQV
          P.P..A.....PLV......T.DLS.HL..VT....L.HP..S.T..A.SFLLA.EPEL...L.HL...V
Retrocopy PSPASAPTS*VPLVSKHMECTMDLSRHLDTVTAKVILMHPSDSFTSHAASFLLASEPELKTQLVHLCLYV

Parental  KGEDEEENH-LEVRETKIKGKSG-RFFMVKL-PVALD-PGMKISVILETVYTHVLQPYPTQITQSEK-QF
          .G..EEEN..LEVRETK.KGKSG.RF.MVKL.P.A.D..G.KISVI.ETVYT.VLQPY.TQ.TQSEK.QF
Retrocopy RGNGEEENN>LEVRETKVKGKSG<RFLMVKL<PSAFD<SGAKISVIVETVYTYVLQPYSTQMTQSEK>QF

Parental  VVFE-GNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFRDVPAYSQDTFKVHYENNS
          VV.E.G...F......K..TM.VK.AS.NV..YTKLGN.T..E.LLDYGPFRD.PAYSQD...VH.ENNS
Retrocopy VVSE<GQPLFVHSLSNK-DTMHVKFASQNVKRYTKLGNSTWFENLLDYGPFRDTPAYSQDAIQVHDENNS

Parental  PFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFKTILPAAAQDV-
          PFL.ITSM...I.VSHW.NIA.E.NVDLKHTG..L.GPF..YD.QR.P.SG.SSIRSFKTILPA.AQDV.
Retrocopy PFLIITSMMQLIKVSHWDNIAAEANVDLKHTGLYL-GPFPHYDDQR*PESGLSSIRSFKTILPADAQDV<

Parental  YYRDEIGNVSTSHLLVLDDSVEMEIRPRFPL-FGGWKTHYIVGYNLPSYEYLYNL
          YY.DEIG.V..SH.L.LDDS.E.EI.P.FPL.F.G.KTHYI..YNL.SY...Y.L
Retrocopy YYQDEIGIVFVSHVLILDDSMEIEI*PCFPL<FVG*KTHYIDDYNLSSYDLEYAL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_721 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000005191	1 retrocopy	retro_btau_123,
Callithrix jacchus	ENSCJAG00000017529	1 retrocopy	retro_cjac_601,
Myotis lucifugus	ENSMLUG00000017213	1 retrocopy	retro_mluc_721 ,
Oryctolagus cuniculus	ENSOCUG00000011098	1 retrocopy	retro_ocun_899,