Parental gene: | SEPT10, ENSCJAG00000017754 |
| Aliases: | None |
| Description: | septin 10 [Source:HGNC Symbol;Acc:14349] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 14:14306655..14385298(-) |
>ENSCJAG00000017754
ATGGCAACGAAAACAACTTGTATGTCTTCACAAGAATCTGATGATGAACAGAGAAAAAGAGAAAACATTCGTTCCTTGAC
TATGTCTGGCCATGTTGGTTTTGAGAGTTTGCCTGATCAGCTGGTGAACAGATCCATTCAGCAAGGTTTCTGCTTTAATA
TTCTCTGCGTTGGGGAAACTGGAATTGGAAAATCAACACTGATTGACACATTGTTTAATACTAATTTTAAAGACCATGAA
TCCTCACATTTTTGCCCAAATGTTAAACTTAAAGCTCAGACATATGAACTCCAGGAAAGTAATGTTCGATTGAAATTGAC
CATTGTGAATACAGTGGGATTTGGTGACCAAATAAATAAAGAAGAGAGCTACCAACCAATAGTTGACTACATAGATGCTC
AGTTTGAGGCCTATCTCCAAGAAGAACTGAAGATTAAGCGTTCTCTCTTTACCTACCACGATTCTCGCATCCATGTGTGC
CTCTACTTCATTTCACCGACAGGCCACTCTCTGAAGACACTTGATCTCTTAACCATGAAGAACCTTGACAGCAAGGTAAA
CATTATACCAGTGATTGCCAAAGCAGATACGGTTTCTAAAACTGAATTACAGAAGTTTAAGATCAAGCTCATGAGTGAAT
TGGTCAGCAATGGCGTCCAGATATACCAGTTCCCAACAGATGATGACACTATTGCTAAGATCAATGCTGCGATGAATGGA
CAGTTGCCGTTTGCTGTTGTGGGAAGTATGGATGAGGTGAAAGTTGGAAACAAGATGGTCAAAGCTCGCCAGTACCCTTG
GGGTGTTGTACAAGTGGAAAATGAAAACCACTGTGACTTTGTAAAGCTGCGGGAAATGCTCATTTCTACAAACATGGAGG
ACCTGCGAGAACAGACCCATACCAGGCACTATGAGCTTTATAGGCGCTGCAAACTGGAGGAAATGGGCTTTACAGATGTG
GGCCCAGAGAACAAGCCGGTCAGTCTTCAAGAGACCTATGAAGCCAAAAGACATGAGTTTCATGGTGAGCGTCAGAGGAA
GGAAGAAGAAATGAAGCAAATGTTTGTGCAGCGAGTAAAGGAGAAAGAAGCCATATTGAAAGAAGCTGAGAGAGAGCTAC
AAGCCAAATTTGAGCACCTTAAGAGACTTCACCAAGAAGAGAGAATGAAGCTCGAAGAAAAGAGAAGACTTTTGGAAGAA
GAAATAATTGCTTTCTCTAAAAAGAAAGCTACCTCTGAGACATCCCACAACCAGTCCTTTCTGGCAACAGGCAGCAATCT
GAGGAAGGACAAGGACCGTAAGAAGGAACAAAGCTGTCGATTCGAACTCCTGTGTGTTGATGTCAGAGCTTGTGAAGCCA
ATGATGGACGTAAAGATGCAGAGAAAGGTAGAGAGGGCCACAGGCAAGGGGGCGGCCAT
ATGGCAACGAAAACAACTTGTATGTCTTCACAAGAATCTGATGATGAACAGAGAAAAAGAGAAAACATTCGTTCCTTGAC
TATGTCTGGCCATGTTGGTTTTGAGAGTTTGCCTGATCAGCTGGTGAACAGATCCATTCAGCAAGGTTTCTGCTTTAATA
TTCTCTGCGTTGGGGAAACTGGAATTGGAAAATCAACACTGATTGACACATTGTTTAATACTAATTTTAAAGACCATGAA
TCCTCACATTTTTGCCCAAATGTTAAACTTAAAGCTCAGACATATGAACTCCAGGAAAGTAATGTTCGATTGAAATTGAC
CATTGTGAATACAGTGGGATTTGGTGACCAAATAAATAAAGAAGAGAGCTACCAACCAATAGTTGACTACATAGATGCTC
AGTTTGAGGCCTATCTCCAAGAAGAACTGAAGATTAAGCGTTCTCTCTTTACCTACCACGATTCTCGCATCCATGTGTGC
CTCTACTTCATTTCACCGACAGGCCACTCTCTGAAGACACTTGATCTCTTAACCATGAAGAACCTTGACAGCAAGGTAAA
CATTATACCAGTGATTGCCAAAGCAGATACGGTTTCTAAAACTGAATTACAGAAGTTTAAGATCAAGCTCATGAGTGAAT
TGGTCAGCAATGGCGTCCAGATATACCAGTTCCCAACAGATGATGACACTATTGCTAAGATCAATGCTGCGATGAATGGA
CAGTTGCCGTTTGCTGTTGTGGGAAGTATGGATGAGGTGAAAGTTGGAAACAAGATGGTCAAAGCTCGCCAGTACCCTTG
GGGTGTTGTACAAGTGGAAAATGAAAACCACTGTGACTTTGTAAAGCTGCGGGAAATGCTCATTTCTACAAACATGGAGG
ACCTGCGAGAACAGACCCATACCAGGCACTATGAGCTTTATAGGCGCTGCAAACTGGAGGAAATGGGCTTTACAGATGTG
GGCCCAGAGAACAAGCCGGTCAGTCTTCAAGAGACCTATGAAGCCAAAAGACATGAGTTTCATGGTGAGCGTCAGAGGAA
GGAAGAAGAAATGAAGCAAATGTTTGTGCAGCGAGTAAAGGAGAAAGAAGCCATATTGAAAGAAGCTGAGAGAGAGCTAC
AAGCCAAATTTGAGCACCTTAAGAGACTTCACCAAGAAGAGAGAATGAAGCTCGAAGAAAAGAGAAGACTTTTGGAAGAA
GAAATAATTGCTTTCTCTAAAAAGAAAGCTACCTCTGAGACATCCCACAACCAGTCCTTTCTGGCAACAGGCAGCAATCT
GAGGAAGGACAAGGACCGTAAGAAGGAACAAAGCTGTCGATTCGAACTCCTGTGTGTTGATGTCAGAGCTTGTGAAGCCA
ATGATGGACGTAAAGATGCAGAGAAAGGTAGAGAGGGCCACAGGCAAGGGGGCGGCCAT
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 20 .00 RPM |
| SRP051959_skeletal_muscle | 9 .26 RPM |
| SRP051959_lymph_node | 7 .60 RPM |
| SRP051959_lung | 25 .52 RPM |
| SRP051959_liver | 39 .12 RPM |
| SRP051959_kidney | 33 .10 RPM |
| SRP051959_heart | 21 .19 RPM |
| SRP051959_colon | 26 .49 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000006122 | other_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000012276 | other_paralog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000014744 | within_species_paralog | 1 retrogene | |
| Homo sapiens | ENSG00000186522 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000013659 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000017273 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000001328 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000012144 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_828 | 93.16 | 99.78 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1736 | 90.02 | 99.12 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2879 | 95.11 | 76.43 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000017754 retrocopies