RetrogeneDB ID: retro_mluc_2285

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430178:63558..64496(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SEPT10
• Ensembl ID: ENSMLUG00000017273
• Aliases: None
• Description: None

Sequence

>retro_mluc_2285
TACCAACCAATAGTTGACTACATAGATGCTCAGTTTGAGGCCTATCTGCAAGAAGAACTGAAGATCAAGCGTTCTCTCTT
TAACTACCACGATTCTCGTGTCCATGCATGCCTCTACTTCATCTCTCCCACAGGCCACTCTCAGAAGACACTGGACCTCT
AGCCATGAAGAGCCTTGACAGCAAGGTGAATATTATACCAGTGATTGCCAAAGCAGATGCAATTTCTAAAACTGAATCAC
AGAAGTTTAAGATCAAGCTCATGAGTGAATTGGTCAGCAATGGCGTCCAGATATACCAATTCCCGACAGATGATGAAACT
CTTGCTAAAATCAATGCTTTAATGAATGGACATTTGCCATTTGCTGTTGTAGGAAGTATGGATGAGGTAAAAGTTGGAAA
TAAGCTGGTCAAAGCTCACCAGTACGCTTGGGGTGCTGTACCAGTGGGAAATGAAAACCGCTGTGACTTTGTAAGCTTCG
CGAAATGCTCATGTGTACAAACGTGGAGGGTCAGAGAGAACAGACCCATACGAGGCCCTGTGAACTGTACAGGCGTTGCA
ACCTGGAGGGAATGGGCTTTCCTGATGTGGGCCCAGAGAACCAGCCTCCCAGTCTTCAAGAGACATAGGAGGCCAAAAGA
CACGAATTTTATGGGGAACGTCAGAGGAAGGAAGAAGAACTGAAGCAGGTGTTTGTGCAGCGGGTGAAGGAGGAAGAAGC
CATGCTAAAAGAAGCTGAAAGAGAGCTGCAGGCCAAATACGAGCACCTCGAAAGAGTTCACCAAGAAGAGAATGAAGCTT
GAGGAGAAGAGAAGACTTTTGGAAGAAGAAATAATCTCTTTCTCTAAAAAGAAAACTACCTCGGAGATATACCAGAACCA
GACCTTTATGGGCAGCAACCTGAAGAAGGACAAGGACCGTAAGAACTCCAATGTTATG

Alignment

ORF - retro_mluc_2285 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.12 %
• Parental protein coverage: 74.76 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  YQPIVDYIDAQFEAYLQEELKIKRSLFNYHDSRVHACLYFISPTGHSLKTLDL-LAMKSLDSKVNIIPVI
          YQPIVDYIDAQFEAYLQEELKIKRSLFNYHDSRVHACLYFISPTGHS.KTLDL.LAMKSLDSKVNIIPVI
Retrocopy YQPIVDYIDAQFEAYLQEELKIKRSLFNYHDSRVHACLYFISPTGHSQKTLDL<LAMKSLDSKVNIIPVI

Parental  AKADAISKTELQKFKIKLMSELVSNGVQIYQFPTDDETVAKINASMNGHLPFAVVGSMDEVKVGNKLVKA
          AKADAISKTE.QKFKIKLMSELVSNGVQIYQFPTDDET.AKINA.MNGHLPFAVVGSMDEVKVGNKLVKA
Retrocopy AKADAISKTESQKFKIKLMSELVSNGVQIYQFPTDDETLAKINALMNGHLPFAVVGSMDEVKVGNKLVKA

Parental  RQYPWGVVQVENENHCDFV-KLREMLICTNMEDLREQTHTRHYELYRRCKLEEMGFADVGPENKPLSLQE
          .QY.WG.V.V.NEN.CDFV.KLREML.CTN.E..REQTHTR..ELYRRC.LE.MGF.DVGPEN.P.SLQE
Retrocopy HQYAWGAVPVGNENRCDFV<KLREMLMCTNVEGQREQTHTRPCELYRRCNLEGMGFPDVGPENQPPSLQE

Parental  TYEAKRHEIYGERQRKEDEMKQMFVQRVKEKEAILKEAERELQAKFEHLKRVHQEERMKLEE-KRRLLEE
          T.EAKRHE.YGERQRKE.E.KQ.FVQRVKE.EA.LKEAERELQAK.EHL.RVHQEE.....E..R.L.EE
Retrocopy T*EAKRHEFYGERQRKEEELKQVFVQRVKEEEAMLKEAERELQAKYEHLERVHQEENEA*GE>RRLLEEE

Parental  EIISFSKKKATSEIYQNQTFMGSNLKKDKDRKNSNFM
          .IISFSKKK.TSEIYQNQTFMGSNLKKDKDRKNSN.M
Retrocopy -IISFSKKKTTSEIYQNQTFMGSNLKKDKDRKNSNVM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2285 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000017754	3 retrocopies	retro_cjac_1736, retro_cjac_2879, retro_cjac_828,
Homo sapiens	ENSG00000186522	1 retrocopy	retro_hsap_4060,
Gorilla gorilla	ENSGGOG00000013659	1 retrocopy	retro_ggor_2728,
Myotis lucifugus	ENSMLUG00000007108	1 retrocopy	retro_mluc_1594,
Myotis lucifugus	ENSMLUG00000017273	1 retrocopy	retro_mluc_2285 ,
Nomascus leucogenys	ENSNLEG00000001328	1 retrocopy	retro_nleu_2111,
Pongo abelii	ENSPPYG00000012144	1 retrocopy	retro_pabe_3335,