Parental gene: | KRT7, ENSCJAG00000017950 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 9:41102414..41176987(+) |
>ENSCJAG00000017950
ATGTCCATCCACTTCAGCTCCCCGCTGTTCAGCTCGCGCTCCGCCGGCTTCTCCGGCCGCGGTGCTCAGGTGCGCCTGAG
CTCCGCGCGCCCCGGTGGCTTCGGCAGCAGCAGCCTCTACGGCCTGGGCGCCTCGCGGCCGCGCGTGAACATGCGCTCCG
CCTATGGGGGCCCGGTGGGCGCCGGCATCCGCGAGGTCACCATCAACCAGAGCCTGCTGGCCCCGCTGCGGCTGGACACA
GACCCCTCCCTCCAGCGGGTGCGCCAGGAGGAGCGTGAGCAGATCAAGACCCTCAACAACAAGTTTGCCTCCTTCATCGA
CAAGGTGCGTTTTCTGGAGCAGCAGAACAAGCTGCTGGAGACCAAGTGGGCGCTGCTGCAGGAGCAGAAGTCAGCCAAGA
GCAGCCGCCTCCCAGACATCTTTGAAGCCCAGATTGCTGGCCTTAGGGGGCAGCTTGAGGCGCTGCAGGTGGATGGGGGC
CGCCTGGAGGTGGAGCTGCGGAGCATGCAGGATGTGGTGGAGGACTTCAAGAATAAGTACGAAGATGAAATTAACCGCCG
CACGGCTGCTGAGAATGAGTTTGTGGTGCTGAAGAAGGATGTGGATGCTGCCTACATGAGCAAGGTGGAGCTGGAGGCCA
AGGTGGTCGCCCTGAATGATGAGATCAACTTCCTCAGGACCCTCCATGAGACGGAGTTGACAGAGTTGCAGTCGCAGATC
TCGGACACGTCCGTGGTGCTGTCCATGGACAACAGCCGCTCCCTGGACCTGGACGGCATCATCGCCGAGGTCAAGGCTCA
GTACGAGGAGATGGCCAAGTGCAGCCGGGCTGAGGCTGAAGCCTGGTACCAGACCAAGTTTGAGACCCTCCAGGCCCAGG
CTGGGAAGCATGGGGACGACCTCCGGAATACCCGGAGCGAGATTGCAGAGATGAACCGGGCCATCCAGAGGCTGCAGGCT
GAGATCGACGCCATCAAGAACCAGCGTGCCAAGTTGGAGGCCGCCATTGCTGAGGCTGAGGAGCGTGGGGAGCTGGCACT
CAAGGATGCTCGTGCCAAGCAGGAGGAGCTGGAGGCTGCCCTGCAGCGGGCCAAGCAAGACATGGCACGGCAGCTGCGTG
AGTACCAGGAGCTGATGAGCGTCAAGCTGGCCCTGGACATCGAGATTGCCACGTACCGCAAGCTTTTGGAGGGCGAGGAG
AGCCGGTTGGCCGGAGATGGAGTGGGAGCCGTGAATATCTCTGTGGTGAATTCCACTGGAGGCAGTGGCAGTGGCAGTGG
TGGTGGCATTGGGCTGAGCTTCGGGGGAACCATGGGCAGCAATGCCCTGAGCTTCTCCAGCAGTGCGGGTCCTGGGGCCC
TGAAGGCTTATTCCATCCGGACCACATCCACCAGTCGCAGGAGCGCCCGCAACTGA
ATGTCCATCCACTTCAGCTCCCCGCTGTTCAGCTCGCGCTCCGCCGGCTTCTCCGGCCGCGGTGCTCAGGTGCGCCTGAG
CTCCGCGCGCCCCGGTGGCTTCGGCAGCAGCAGCCTCTACGGCCTGGGCGCCTCGCGGCCGCGCGTGAACATGCGCTCCG
CCTATGGGGGCCCGGTGGGCGCCGGCATCCGCGAGGTCACCATCAACCAGAGCCTGCTGGCCCCGCTGCGGCTGGACACA
GACCCCTCCCTCCAGCGGGTGCGCCAGGAGGAGCGTGAGCAGATCAAGACCCTCAACAACAAGTTTGCCTCCTTCATCGA
CAAGGTGCGTTTTCTGGAGCAGCAGAACAAGCTGCTGGAGACCAAGTGGGCGCTGCTGCAGGAGCAGAAGTCAGCCAAGA
GCAGCCGCCTCCCAGACATCTTTGAAGCCCAGATTGCTGGCCTTAGGGGGCAGCTTGAGGCGCTGCAGGTGGATGGGGGC
CGCCTGGAGGTGGAGCTGCGGAGCATGCAGGATGTGGTGGAGGACTTCAAGAATAAGTACGAAGATGAAATTAACCGCCG
CACGGCTGCTGAGAATGAGTTTGTGGTGCTGAAGAAGGATGTGGATGCTGCCTACATGAGCAAGGTGGAGCTGGAGGCCA
AGGTGGTCGCCCTGAATGATGAGATCAACTTCCTCAGGACCCTCCATGAGACGGAGTTGACAGAGTTGCAGTCGCAGATC
TCGGACACGTCCGTGGTGCTGTCCATGGACAACAGCCGCTCCCTGGACCTGGACGGCATCATCGCCGAGGTCAAGGCTCA
GTACGAGGAGATGGCCAAGTGCAGCCGGGCTGAGGCTGAAGCCTGGTACCAGACCAAGTTTGAGACCCTCCAGGCCCAGG
CTGGGAAGCATGGGGACGACCTCCGGAATACCCGGAGCGAGATTGCAGAGATGAACCGGGCCATCCAGAGGCTGCAGGCT
GAGATCGACGCCATCAAGAACCAGCGTGCCAAGTTGGAGGCCGCCATTGCTGAGGCTGAGGAGCGTGGGGAGCTGGCACT
CAAGGATGCTCGTGCCAAGCAGGAGGAGCTGGAGGCTGCCCTGCAGCGGGCCAAGCAAGACATGGCACGGCAGCTGCGTG
AGTACCAGGAGCTGATGAGCGTCAAGCTGGCCCTGGACATCGAGATTGCCACGTACCGCAAGCTTTTGGAGGGCGAGGAG
AGCCGGTTGGCCGGAGATGGAGTGGGAGCCGTGAATATCTCTGTGGTGAATTCCACTGGAGGCAGTGGCAGTGGCAGTGG
TGGTGGCATTGGGCTGAGCTTCGGGGGAACCATGGGCAGCAATGCCCTGAGCTTCTCCAGCAGTGCGGGTCCTGGGGCCC
TGAAGGCTTATTCCATCCGGACCACATCCACCAGTCGCAGGAGCGCCCGCAACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 0 .86 RPM |
| SRP051959_skeletal_muscle | 0 .52 RPM |
| SRP051959_lymph_node | 0 .32 RPM |
| SRP051959_lung | 31 .14 RPM |
| SRP051959_liver | 2 .40 RPM |
| SRP051959_kidney | 48 .10 RPM |
| SRP051959_heart | 5 .12 RPM |
| SRP051959_colon | 63 .68 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000018147 | within_species_paralog | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000017758 | ortholog_one2many | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000002820 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_419 | 92.80 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_648 | 91.78 | 77.49 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000017950 retrocopies