Parental gene:

ENSCJAG00000018147

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:41746908..41798447(-)


>ENSCJAG00000018147
CGAGTCCTGCCCAGAGGTGGCAGGTGTTGGTTCAGCTCGCCTGCTTCCACTCCTGCCTCCACCATGTCCACCAGGGTGAC
CCATAAGTCCTACAAGGTGTCCACCTCTGGCCCCGGGGCCTTCAGCAGCCGCTCCTTAACGAGTGGGCCTAGTGCCCGCT
TGAGCTTCTCCCGAGTGAGCAGTAGTGGCTTCCGGGGTGGCCTGGGTGCAGGCTATTTTGGGGCCAGCGGCATAGGCATG
GGAGGCATCACCGCCGTCACCATCAACCAGAGCCTGCTGAACCCCATTAAGGTGGATGTGGACCCCAACATCCAGGCCGT
GCGTACCCAGGAGAAGGAGCAGATCAAGACCCTCAACAACAAGTTTGCTTCCTTCATCGACAAGGTGCGGTTCCTGGAGC
AGCAGAACAAGATGCTGGAGACCAAGTGGAGCCTCCTGCAGCAGCAGAAAACGGCTAGGAGCAACATGGATAACATGTTT
GAGAACTACATCAACAACCTGAGGCGGCAGCTGGAGACTCTGGGCCAGGAGAAGCTGAAGCTGGAGGCGGAGCTTGGCAA
CATGCAGGGGCTGGTGGAGGACTTCAAGAACAAGTATGAGGAAGAGATCAATAAGCGTACAGAGATGGAGAATGAATTTG
TCCTCATCAAGAAGGATGTGGATGAAGCTTACATGAACAAGGTAGAGCTGGAGTCTCGCCTGGAAGGACTGACTGACGAG
ATCAACTTCCTCAGGCAGCTGTATGAAGAGGAGATCCGGGAGCTGCAGTCCCAGATCTCCGACACGTCTGTGGTGCTGTC
CATGGACAACAGCCGCTCTCTGGACATGGATGGCATCATTGCCGAGGTCAAGGCGCAGTACGAGGAGATCGCCAACCGCA
GCCGGGCTGAGGCGGAGAGCATATACCAGATCAAGTATGAGGAGTTGCAGATGCTGGCTGGGAAGCACGGGGATGACCTG
CGGCGTACGAAGACTGAGATCTCTGAGATGAACCGGAACATCAGCCGGCTCCAGGCTGAGATCGAGGGCCTCAAAGGCCA
GAGGGCTTCCCTGGAGGCTGCCATTAGAGATGCTGAGGATCGCGGGGAGCGGGCACTCAAGGATGCTCATGACAAGCAGA
AGGAGCTGGAGGCTGCCCTGCAGCGGGCCAAGCAGGACATGGCAAAGCAGCTGCGTGAGTACCAGGAGCTGATGAATGTC
AAACTGGCCCTGGACATCGAGATCGCCACCTACCGCAAGCTACTGGAGGGCGAGGAAAGCCGGCTGGAGTCCGGGATGCA
GAACATGAGTATCCACACGAAGACCACCAGCGGCTATGCAGGTGGTCTGAGCTCTGCCTATGGGGGCCTCACAAGCCCCG
GCCTCAGCTATGGCCTGGGCTCCAGCTTTGGCTCTGTCGCGGGCTCCAGCTCCATCAGCCGCACCAGCTCCACCAAGGCT
GTGGTTGTGAAGAAGATTGAGACCCGCGATGGGAGGCTGGTGTCTGAGTCCTCTGACATCCTGCCCAAGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 1 .28 RPM
SRP051959_skeletal_muscle 1 .18 RPM
SRP051959_lymph_node 1 .14 RPM
SRP051959_lung 11 .60 RPM
SRP051959_liver 40 .29 RPM
SRP051959_kidney 35 .76 RPM
SRP051959_heart 2 .54 RPM
SRP051959_colon 214 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000007199 ortholog_many2many 2 retrogenes
retro_cfam_1036, retro_cfam_1590,
Callithrix jacchus ENSCJAG00000017950 within_species_paralog 2 retrogenes
retro_cjac_419, retro_cjac_648,
Cavia porcellus ENSCPOG00000002615 ortholog_many2many 5 retrogenes
retro_cpor_1269, retro_cpor_1459, retro_cpor_233, retro_cpor_302, retro_cpor_516,
Dasypus novemcinctus ENSDNOG00000007400 ortholog_one2many 3 retrogenes
retro_dnov_1267, retro_dnov_1886, retro_dnov_2358,
Felis catus ENSFCAG00000000298 ortholog_many2many 2 retrogenes
retro_fcat_1142, retro_fcat_891,
Homo sapiens ENSG00000170421 possible_ortholog 28 retrogenes
retro_hsap_1012, retro_hsap_1024, retro_hsap_1324, retro_hsap_1513, retro_hsap_1557, retro_hsap_1599, retro_hsap_169, retro_hsap_1708, retro_hsap_235, retro_hsap_2354, retro_hsap_2669, retro_hsap_2731, retro_hsap_2768, retro_hsap_2797, retro_hsap_2842, retro_hsap_3069, retro_hsap_3359, retro_hsap_3379, retro_hsap_3433, retro_hsap_371, retro_hsap_3963, retro_hsap_4203, retro_hsap_4688, retro_hsap_4691, retro_hsap_4775, retro_hsap_644, retro_hsap_844, retro_hsap_932,
Gorilla gorilla ENSGGOG00000014673 possible_ortholog 18 retrogenes
retro_ggor_1160, retro_ggor_1787, retro_ggor_1862, retro_ggor_1897, retro_ggor_1900, retro_ggor_2320, retro_ggor_2662, retro_ggor_2913, retro_ggor_2918, retro_ggor_297, retro_ggor_2975, retro_ggor_382, retro_ggor_564, retro_ggor_66, retro_ggor_691, retro_ggor_751, retro_ggor_803, retro_ggor_809,
Macaca mulatta ENSMMUG00000002163 possible_ortholog 22 retrogenes
retro_mmul_1069, retro_mmul_1122, retro_mmul_1178, retro_mmul_1349, retro_mmul_1351, retro_mmul_1412, retro_mmul_1697, retro_mmul_1753, retro_mmul_1810, retro_mmul_1855, retro_mmul_1866, retro_mmul_2097, retro_mmul_2137, retro_mmul_2357, retro_mmul_2431, retro_mmul_2546, retro_mmul_289, retro_mmul_488, retro_mmul_58, retro_mmul_766, retro_mmul_816, retro_mmul_886,
Mustela putorius furo ENSMPUG00000006441 ortholog_many2many 7 retrogenes
retro_mputfur_1101, retro_mputfur_1208, retro_mputfur_1271, retro_mputfur_1557, retro_mputfur_1587, retro_mputfur_556, retro_mputfur_895,
Mus musculus ENSMUSG00000049382 ortholog_one2many 1 retrogene
retro_mmus_2905,
Nomascus leucogenys ENSNLEG00000017733 possible_ortholog 8 retrogenes
retro_nleu_1913, retro_nleu_225, retro_nleu_2285, retro_nleu_2421, retro_nleu_2485, retro_nleu_2727, retro_nleu_2787, retro_nleu_672,
Oryctolagus cuniculus ENSOCUG00000006945 ortholog_one2many 1 retrogene
retro_ocun_313,
Otolemur garnettii ENSOGAG00000011740 ortholog_many2many 16 retrogenes
retro_ogar_1076, retro_ogar_1162, retro_ogar_1256, retro_ogar_1572, retro_ogar_1874, retro_ogar_1898, retro_ogar_1952, retro_ogar_2004, retro_ogar_2149, retro_ogar_2177, retro_ogar_2261, retro_ogar_2500, retro_ogar_3198, retro_ogar_3318, retro_ogar_339, retro_ogar_664,
Pongo abelii ENSPPYG00000004562 possible_ortholog 31 retrogenes
retro_pabe_1102, retro_pabe_1261, retro_pabe_1289, retro_pabe_1460, retro_pabe_1743, retro_pabe_2063, retro_pabe_2077, retro_pabe_2129, retro_pabe_2142, retro_pabe_2214, retro_pabe_2270, retro_pabe_2352, retro_pabe_2544, retro_pabe_2741, retro_pabe_2763, retro_pabe_2787, retro_pabe_2842, retro_pabe_2926, retro_pabe_2943, retro_pabe_3138, retro_pabe_332, retro_pabe_3439, retro_pabe_3644, retro_pabe_3716, retro_pabe_417, retro_pabe_460, retro_pabe_569, retro_pabe_605, retro_pabe_701, retro_pabe_803, retro_pabe_851,
Pteropus vampyrus ENSPVAG00000009360 ortholog_one2many 3 retrogenes
retro_pvam_1299, retro_pvam_1396, retro_pvam_45,
Rattus norvegicus ENSRNOG00000009779 ortholog_one2many 1 retrogene
retro_rnor_807,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_124 99.39 97.81
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2. retro_cjac_167 96.34 97.81
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3. retro_cjac_216 98.17 97.81
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Download FASTA sequences of all ENSCJAG00000018147 retrocopies