Parental gene: | AHCY, ENSCJAG00000018303 |
| Aliases: | None |
| Description: | adenosylhomocysteinase [Source:HGNC Symbol;Acc:343] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 5:2962154..2997059(+) |
>ENSCJAG00000018303
ATGTCTGACAAACTGCCCTACAAAGTCGCTGACATCGGCCTGGCTGACTGGGGACGCAAGGCCCTGAACATTGCGGAGAA
CGAGATGCCGGGCCTGATGCGCATGCGTGAGCGGTACTCGACTTCCAAGCCGCTGATGGGCGCCCGCATCGCCGGCTGCC
TGCACATGACGGTGGAGACGGCCGTCCTCATTGAGACCCTGGTCGCCCTGGGTGCTGAGGTGCGGTGGTCCAGCTGCAAC
ATATTCTCCACGCAGGACCATGCGGCAGCTGCCATCGCCAAGGCTGGCATTCCAGTGTATGCCTGGAAGGGCGAAACGGA
TGAGGAGTACCTGTGGTGCATTGAGCAGACGCTGTACTTCAAGGACGGGCCCCTCAACATGATTCTGGATGATGGAGGCG
ACCTCACTAACCTCATCCACACCAAGTACCCACAGCTTCTGCCGGGCATCCGAGGCATCTCTGAGGAGACCACGACCGGG
GTCCACAACCTCTACAAGATGATGGCCACTGGGGTCCTGAAGGTGCCCGCCATCAACGTCAACGACTCCGTCACCAAGAG
CAAGTTTGACAACCTCTATGGCTGCCGGGAGTCCCTCATAGATGGCATCAAGCGGGCCACAGACGTGATGATTGCCGGCA
AGGTAGCAGTGGTAGCAGGCTATGGCGATGTGGGCAAGGGCTGTGCCCAGGCCCTGAGGGGTTTCGGGGCCCGCGTCATC
ATCACCGAGATTGACCCCATCAATGCACTGCAGGCCGCCATGGAGGGCTATGAGGTGACCACCATGGATGAGGCCTGTCA
GGAGGGCAATATCTTCGTCACCACCACAGGCTGTGTTGACATCATCCTTGGCCGGCACTTTGAGCAAATGAAGGATGATG
CCATCGTGTGTAACATCGGACACTTTGATGTGGAGATCGACGTCAAGTGGCTCAACGAGAATGCTGTGGAGAAGGTGAAC
ATCAAACCGCAGGTGGACCGGTACCGGCTGAAGAATGGGCACCGCATCATCCTGCTGGCGGAGGGTCGGCTGGTCAATCT
GGGTTGTGCCATGGGCCACCCCAGCTTCGTGATGAGTAACTCCTTCACCAACCAGGTGATGGCGCAGATCGAGCTATGGA
CTCACCCTGACAAGTACCCTGTTGGGGTTCACTTCCTGCCCAAGAAGCTGGATGAGGCAGTGGCTGAAGCCCACCTGGGC
AAGCTGAACGTGAAGTTGACCAAGCTGACAGAGAAGCAGGCTCAGTACCTGGGCATGTCCCGTGATGGCCCCTTCAAGCC
GGATCACTACCGCTACTGA
ATGTCTGACAAACTGCCCTACAAAGTCGCTGACATCGGCCTGGCTGACTGGGGACGCAAGGCCCTGAACATTGCGGAGAA
CGAGATGCCGGGCCTGATGCGCATGCGTGAGCGGTACTCGACTTCCAAGCCGCTGATGGGCGCCCGCATCGCCGGCTGCC
TGCACATGACGGTGGAGACGGCCGTCCTCATTGAGACCCTGGTCGCCCTGGGTGCTGAGGTGCGGTGGTCCAGCTGCAAC
ATATTCTCCACGCAGGACCATGCGGCAGCTGCCATCGCCAAGGCTGGCATTCCAGTGTATGCCTGGAAGGGCGAAACGGA
TGAGGAGTACCTGTGGTGCATTGAGCAGACGCTGTACTTCAAGGACGGGCCCCTCAACATGATTCTGGATGATGGAGGCG
ACCTCACTAACCTCATCCACACCAAGTACCCACAGCTTCTGCCGGGCATCCGAGGCATCTCTGAGGAGACCACGACCGGG
GTCCACAACCTCTACAAGATGATGGCCACTGGGGTCCTGAAGGTGCCCGCCATCAACGTCAACGACTCCGTCACCAAGAG
CAAGTTTGACAACCTCTATGGCTGCCGGGAGTCCCTCATAGATGGCATCAAGCGGGCCACAGACGTGATGATTGCCGGCA
AGGTAGCAGTGGTAGCAGGCTATGGCGATGTGGGCAAGGGCTGTGCCCAGGCCCTGAGGGGTTTCGGGGCCCGCGTCATC
ATCACCGAGATTGACCCCATCAATGCACTGCAGGCCGCCATGGAGGGCTATGAGGTGACCACCATGGATGAGGCCTGTCA
GGAGGGCAATATCTTCGTCACCACCACAGGCTGTGTTGACATCATCCTTGGCCGGCACTTTGAGCAAATGAAGGATGATG
CCATCGTGTGTAACATCGGACACTTTGATGTGGAGATCGACGTCAAGTGGCTCAACGAGAATGCTGTGGAGAAGGTGAAC
ATCAAACCGCAGGTGGACCGGTACCGGCTGAAGAATGGGCACCGCATCATCCTGCTGGCGGAGGGTCGGCTGGTCAATCT
GGGTTGTGCCATGGGCCACCCCAGCTTCGTGATGAGTAACTCCTTCACCAACCAGGTGATGGCGCAGATCGAGCTATGGA
CTCACCCTGACAAGTACCCTGTTGGGGTTCACTTCCTGCCCAAGAAGCTGGATGAGGCAGTGGCTGAAGCCCACCTGGGC
AAGCTGAACGTGAAGTTGACCAAGCTGACAGAGAAGCAGGCTCAGTACCTGGGCATGTCCCGTGATGGCCCCTTCAAGCC
GGATCACTACCGCTACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 5 .86 RPM |
| SRP051959_skeletal_muscle | 6 .38 RPM |
| SRP051959_lymph_node | 3 .08 RPM |
| SRP051959_lung | 4 .16 RPM |
| SRP051959_liver | 25 .54 RPM |
| SRP051959_kidney | 49 .14 RPM |
| SRP051959_heart | 7 .79 RPM |
| SRP051959_colon | 6 .66 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Echinops telfairi | ENSETEG00000002576 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000101444 | ortholog_one2one | 6 retrogenes | |
| Gorilla gorilla | ENSGGOG00000014694 | ortholog_one2many | 5 retrogenes | |
| Monodelphis domestica | ENSMODG00000002753 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000027597 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000010041 | possible_ortholog | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000008592 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000010935 | ortholog_one2one | 9 retrogenes | |
| Pan troglodytes | ENSPTRG00000013414 | ortholog_one2one | 7 retrogenes | |
| Rattus norvegicus | ENSRNOG00000017777 | ortholog_one2many | 7 retrogenes | |
| Sus scrofa | ENSSSCG00000007278 | possible_ortholog | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000007163 | ortholog_one2one | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000003632 | ortholog_one2one | 1 retrogene | |
| Xenopus tropicalis | ENSXETG00000019486 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_480 | 72.35 | 99.54 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1028 | 70.95 | 87.13 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1248 | 72.59 | 90.51 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_1806 | 90.80 | 61.88 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_2132 | 84.06 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_2839 | 70.42 | 58.17 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_3287 | 80.42 | 65.97 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000018303 retrocopies