Parental gene: | AHCY, ENSPTRG00000013414 |
| Aliases: | None |
| Description: | Adenosylhomocysteinase [Source:UniProtKB/TrEMBL;Acc:H2QK78] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 20:31081371..31104524(-) |
>ENSPTRG00000013414
ATGTCTGACAAACTGCCCTACAAAGTCGCCGACATCGGCCTGGCTGCCTGGGGACGCAAGGCCCTGGACATTGCTGAGAA
CGAGATGCCGGGCTTGATGCGTATGCGGGAGCGGTACTCGGCCTCCAAGCCACTGAAGGGCGCCCGCATCGCTGGCTGCC
TGCACATGACCGTGGAGACGGCCGTCCTCATTGAGACCCTCGTCACCCTGGGTGCTGAGGTGCAGTGGTCCAGCTGCAAC
ATCTTCTCCACCCAGGACCATGCGGCGGCTGCCATTGCCAAGGCTGGCATTCCGGTGTATGCCTGGAAGGGCGAAACGGA
CGAGGAGTACCTGTGGTGCATTGAGCAGACCCTGTACTTCAAGGACGGGCCCCTCAACATGATTCTGGACGATGGGGGCG
ACCTCACCAACCTCATCCACACCAAGTACCCGCAGCTTCTGCCAGGCATCCGAGGCATCTCTGAGGAGACCACGACTGGG
GTCCACAACCTCTACAAGATGATGGCCAATGGGATCCTCAAGGTGCCTGCCATCAATGTCAATGACTCCGTCACCAAGAG
CAAGTTTGACAACCTCTATGGCTGCCGGGAGTCCCTCATAGATGGCATCAAGCGGGCCACAGATGTGATGATTGCCGGCA
AGGTAGCGGTGGTAGCAGGCTATGGTGATGTGGGCAAGGGCTGTGCCCAGGCCCTGCGGGGTTTCGGAGCCCGCGTCATC
ATCACCGAGATTGACCCCATCAACGCACTGCAGGCTGCCATGGAGGGCTATGAGGTGACCACCATGGATGAGGCCTGTCA
GGAGGGCAACATCTTTGTCACCACCACAGGCTGTATTGACATCATCCTTGGCCGGCACTTTGAGCAGATGAAGGATGATG
CCATTGTGTGTAACATTGGACACTTTGACGTGGAGATCGATGTCAAGTGGCTCAACGAGAATGCTGTGGAGAAGGTGAAC
ATCAAGCCGCAGGTGGACCGGTATCGGTTGAAGAATGGGCGCCGCATCATCCTGCTGGCCGAGGGTCGGCTGGTCAACCT
GGGTTGTGCCATGGGCCACCCCAGCTTCGTGATGAGTAACTCCTTCACCAACCAGGTGATGGCGCAGATCGAGCTGTGGA
CCCATCCAGACAAGTACCCCGTTGGGGTTCATTTCCTGCCCAAGAAGCTGGATGAGGCAGTGGCTGAAGCCCACCTGGGC
AAGCTGAATGTGAAGTTGACCAAGCTAACTGAGAAGCAAGCCCAGTACCTGGGCATGTCCTGTGATGGCCCCTTCAAGCC
GGATCACTACCGCTACTGA
ATGTCTGACAAACTGCCCTACAAAGTCGCCGACATCGGCCTGGCTGCCTGGGGACGCAAGGCCCTGGACATTGCTGAGAA
CGAGATGCCGGGCTTGATGCGTATGCGGGAGCGGTACTCGGCCTCCAAGCCACTGAAGGGCGCCCGCATCGCTGGCTGCC
TGCACATGACCGTGGAGACGGCCGTCCTCATTGAGACCCTCGTCACCCTGGGTGCTGAGGTGCAGTGGTCCAGCTGCAAC
ATCTTCTCCACCCAGGACCATGCGGCGGCTGCCATTGCCAAGGCTGGCATTCCGGTGTATGCCTGGAAGGGCGAAACGGA
CGAGGAGTACCTGTGGTGCATTGAGCAGACCCTGTACTTCAAGGACGGGCCCCTCAACATGATTCTGGACGATGGGGGCG
ACCTCACCAACCTCATCCACACCAAGTACCCGCAGCTTCTGCCAGGCATCCGAGGCATCTCTGAGGAGACCACGACTGGG
GTCCACAACCTCTACAAGATGATGGCCAATGGGATCCTCAAGGTGCCTGCCATCAATGTCAATGACTCCGTCACCAAGAG
CAAGTTTGACAACCTCTATGGCTGCCGGGAGTCCCTCATAGATGGCATCAAGCGGGCCACAGATGTGATGATTGCCGGCA
AGGTAGCGGTGGTAGCAGGCTATGGTGATGTGGGCAAGGGCTGTGCCCAGGCCCTGCGGGGTTTCGGAGCCCGCGTCATC
ATCACCGAGATTGACCCCATCAACGCACTGCAGGCTGCCATGGAGGGCTATGAGGTGACCACCATGGATGAGGCCTGTCA
GGAGGGCAACATCTTTGTCACCACCACAGGCTGTATTGACATCATCCTTGGCCGGCACTTTGAGCAGATGAAGGATGATG
CCATTGTGTGTAACATTGGACACTTTGACGTGGAGATCGATGTCAAGTGGCTCAACGAGAATGCTGTGGAGAAGGTGAAC
ATCAAGCCGCAGGTGGACCGGTATCGGTTGAAGAATGGGCGCCGCATCATCCTGCTGGCCGAGGGTCGGCTGGTCAACCT
GGGTTGTGCCATGGGCCACCCCAGCTTCGTGATGAGTAACTCCTTCACCAACCAGGTGATGGCGCAGATCGAGCTGTGGA
CCCATCCAGACAAGTACCCCGTTGGGGTTCATTTCCTGCCCAAGAAGCTGGATGAGGCAGTGGCTGAAGCCCACCTGGGC
AAGCTGAATGTGAAGTTGACCAAGCTAACTGAGAAGCAAGCCCAGTACCTGGGCATGTCCTGTGATGGCCCCTTCAAGCC
GGATCACTACCGCTACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 36 .75 RPM |
| SRP007412_cerebellum | 19 .04 RPM |
| SRP007412_heart | 25 .94 RPM |
| SRP007412_kidney | 149 .14 RPM |
| SRP007412_liver | 107 .07 RPM |
| SRP007412_testis | 149 .75 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000018303 | ortholog_one2one | 7 retrogenes | |
| Echinops telfairi | ENSETEG00000002576 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000101444 | ortholog_one2one | 6 retrogenes | |
| Gorilla gorilla | ENSGGOG00000014694 | ortholog_one2one | 5 retrogenes | |
| Monodelphis domestica | ENSMODG00000002753 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000027597 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000010041 | possible_ortholog | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000008592 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000010935 | ortholog_one2one | 9 retrogenes | |
| Rattus norvegicus | ENSRNOG00000017777 | ortholog_one2many | 7 retrogenes | |
| Sus scrofa | ENSSSCG00000007278 | possible_ortholog | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000007163 | ortholog_one2one | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000003632 | ortholog_one2one | 1 retrogene | |
| Xenopus tropicalis | ENSXETG00000019486 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_559 | 77.29 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_771 | 72.34 | 75.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_1015 | 80.32 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_1698 | 85.38 | 69.44 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_1730 | 74.79 | 54.40 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_2860 | 80.68 | 60.65 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ptro_3011 | 75.57 | 59.72 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000013414 retrocopies