Parental gene:

ENSCJAG00000018571

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:67696302..67701697(+)


>ENSCJAG00000018571
ATGGCGGCTACCAGTGGAACTGATGAACCGGTTTCCGGGGAGTTGGTGTCTGTGGCACATGCGCTTTCCCTCCCAGCAGA
GTCCTATGGCAACGATCCTGACATTGAGATGGCTTGGGCCATGAGGGCAATGCAGCATGCTGAAGTCTATTACAAGCTGA
TTTCATCAGTTGACCCACAGTTCCTGAAACTCACCAAAGTAGATGACCAAATTTACTCTGAGTTCCGGAAAAATTTTGAG
AAGCTGAAGATAGATGTATTGGACCCAGAAGAACTCAAGTCAGAATCAGCCAAAGAGAAGTGGAGGCCATTCTGCTTAAA
GTTTAATGGGATTGTTGAAGACTTCAACTATGGTACTTTGCTGCGACTAGATTGTTCTCAGGGCTACACTGAAGAAAACA
CCATCTTTGCCCCCAGGATACAATTCTTTGCCATTGAAATTGCTCGGAACCGGGAAGGCTGTAACAAAGCTGTTTATATC
AGTGTTCAGGACAAAGAAGGAGAGAAAGAAGTCAACAATGGAGGAGAAAAAAGAGCTGACAGGGGAGAAGAGAACACCAA
GAATAGAGGAGAGAAAGGAGTTGATAGTGGAGAAGAAAAAGAGGAAGGAATCAACAGAGAAGAGAAAACTGACAAAGGAG
GAGAAAAAGGGGAAGAAGCTGACAAAGACATCAACAGAAGTGGTGAAAAAGCTATGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 4 .62 RPM
SRP051959_skeletal_muscle 2 .66 RPM
SRP051959_lymph_node 5 .46 RPM
SRP051959_lung 5 .16 RPM
SRP051959_liver 1 .73 RPM
SRP051959_kidney 3 .68 RPM
SRP051959_heart 2 .70 RPM
SRP051959_colon 2 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000017228 ortholog_many2many 2 retrogenes
retro_cfam_1588, retro_cfam_944,
Equus caballus ENSECAG00000009882 ortholog_one2many 1 retrogene
retro_ecab_532,
Erinaceus europaeus ENSEEUG00000001116 ortholog_one2many 1 retrogene
retro_eeur_377,
Monodelphis domestica ENSMODG00000009685 ortholog_one2many 2 retrogenes
retro_mdom_1002, retro_mdom_572,
Mus musculus ENSMUSG00000031226 ortholog_one2many 1 retrogene
retro_mmus_1569,
Oryctolagus cuniculus ENSOCUG00000001088 ortholog_one2many 3 retrogenes
retro_ocun_1017, retro_ocun_1402, retro_ocun_595,
Otolemur garnettii ENSOGAG00000015205 ortholog_many2many 1 retrogene
retro_ogar_3063,
Rattus norvegicus ENSRNOG00000002662 ortholog_one2many 3 retrogenes
retro_rnor_1703, retro_rnor_1705, retro_rnor_826,
Sarcophilus harrisii ENSSHAG00000017872 ortholog_one2many 1 retrogene
retro_shar_132,
Tupaia belangeri ENSTBEG00000003411 ortholog_one2many 3 retrogenes
retro_tbel_3448, retro_tbel_494, retro_tbel_979,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1880 86.14 71.55
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Download FASTA sequences of all ENSCJAG00000018571 retrocopies