Parental gene: | PBDC1, ENSMODG00000009685 |
| Aliases: | None |
| Description: | polysaccharide biosynthesis domain containing 1 [Source:HGNC Symbol;Acc:28790] |
| Organism: | Opossum (Monodelphis domestica) |
| Coordinates: | 1:583878774..583882966(-) |
>ENSMODG00000009685
GGAGAGCTGTTGTCGGCGGCTCACGCGCTTTCCCTGCCGGCTGAGGCCTATGGCAACGATCCCAACATTGAGATGGTTTG
GGCCATGAAGGCTATGCAGCATGCTGAGGTTTATTACAATTTGATTTCTTCAGTTGACCCCTTGTTCTTAAGACTCACTA
AAGTGGACGACCAGATCTATTCAGAGTTCCGGGAGAACTTTGGGAAACTCAAGATAGATGTGTTGGACCCAGAAGAGCTC
AAATCGGAACCAGCTAAAGAAAAGTGGAGACCTTTTTGCATGAAGTTCAATGGTATTGTGGAAGATTACAACTATGGTAC
ATTGCTACGACTGGACTGTACTCAAGGGTATAGTGAAGAAAACACTATCTTTGGT
GGAGAGCTGTTGTCGGCGGCTCACGCGCTTTCCCTGCCGGCTGAGGCCTATGGCAACGATCCCAACATTGAGATGGTTTG
GGCCATGAAGGCTATGCAGCATGCTGAGGTTTATTACAATTTGATTTCTTCAGTTGACCCCTTGTTCTTAAGACTCACTA
AAGTGGACGACCAGATCTATTCAGAGTTCCGGGAGAACTTTGGGAAACTCAAGATAGATGTGTTGGACCCAGAAGAGCTC
AAATCGGAACCAGCTAAAGAAAAGTGGAGACCTTTTTGCATGAAGTTCAATGGTATTGTGGAAGATTACAACTATGGTAC
ATTGCTACGACTGGACTGTACTCAAGGGTATAGTGAAGAAAACACTATCTTTGGT
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 71 .88 RPM |
| SRP007412_cerebellum | 79 .33 RPM |
| SRP007412_heart | 62 .80 RPM |
| SRP007412_kidney | 72 .43 RPM |
| SRP007412_liver | 63 .44 RPM |
| SRP007412_testis | 56 .18 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000017228 | ortholog_one2many | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000018571 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000009882 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000001116 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000031226 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000001088 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000015205 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000002662 | ortholog_one2one | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000017872 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000003411 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mdom_572 | 84.62 | 52.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mdom_1002 | 75.81 | 99.20 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMODG00000009685 retrocopies