Parental gene:

ENSCJAG00000018988

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:20228562..20258911(-)


>ENSCJAG00000018988
ATGGACAACAGACAGAAGGTCACCCCAGCTCTGATCATTGCCATCACAGTTGCTACAATTGGCTCTTTCCAGTATGGCTA
CAACACTGGGGTCATCAATGCTCCTGAGATGATCATAAAGGAATTTGTCAATAACACTTTGAAGAACAAGAAAAATGCCC
CTCCTTCTGAGATGTTGCTCACGTCCCTCTGGTCCTTGTCCGTGGCCATATTCTCCGTCGGTGGTATGATTGGCTCCTTT
TCCGTCGGACTCTTTGTCAATCGCTTTGGCAGGCGCAATTCAATGCTGATTGTCAACCTGCTGGCTGTCACCGGTGGCTG
CCTTATGGGACTGTGTAAAATGGCTGAGTCGGTGGAAATGCTGATCCTGGGCCGCTTGGTTATTGGCCTCTTCTGCGGAC
TGTGCACAGGTTTTGTGCCCATGTACATTGGAGAGATCTCACCTACTGCCCTGCGGGGTGCCTTTGGCACTCTCAACCAG
CTGGGAATCGTTGTCGGAATTCTGGTGGCCCAGATCTTTGGTCTGGAATTCATCCTTGGGTCTGAAGTGCTGTGGCCAGT
GTTACTGGGCTTTACCATCCTTCCTGCTATCCTACAAAGTGCAGCCCTTCCATTTTGCCCTGAAAGTCCCAGATTTTTGC
TCATTAACAGAAAAGAAGAAGAGAATGCTAAGCAGATCCTCCAGCGGTTGTGGGGCACCCAGGATGTATCCCAAGACATC
CAGGAGATGAAAGAGGAGAGTGCAAGGATGTCACAAGAAAAGCAAGTCACCGTGCTGGAGCTCTTTAGAGTATCCAGCTA
CCGACAGCCCATCATCATTTCCATCGTGCTCCAGCTCTCTCAGCAGCTCTCTGGAATCAATGCTGTGTTCTATTACTCAA
CAGGAATCTTCAAGGACGCAGGTGTTCAAGAACCCATCTATGCCACCATCGGCGCGGGTGTGGTTAATACTATCTTCACT
GTAGTTTCTCTATTTCTGGTGGAAAGGGCAGGAAGAAGGACTCTGCATATGATAGGCCTTGGAGGGATGGCTCTTTGTTC
CCTACTCATGACTGTTTCTTTGTTATTAAAGGATAACTATAATGGCATGAGCTTTGTCTGTATTGGGGCTATCTTGGTCT
TTGTGGCCTTCTTTGAAATTGGACCAGGCCCCATTCCCTGGTTTATTGTGGCCGAACTCTTCAGCCAGGGCCCCCGCCCA
GCTGCGATGGCAGTGGCCGGCTGCTCCAACTGGACCTCCAACTTCCTAGTCGGACTGCTCTTCCCCTCTGCTGCTTACTA
TTTAGGACCCTCCGTTTTCATTATCTTCACCGGCTTCCTCGTTACCTTTTTGATCTTTACCTTCTTCAAAGTCCCTGAGA
CCCGTGGCAGGACTTTTGAGGATATCACACGGGCCTTTGAAGGGCAGGCACATGGTGCAAATCGATCTGGGACGCAAGGC
GTTGTGGAGATGAACAGCATCAAGCCTGCTAAGGAGACCACCACCAGTGTCTAA

Library Parental gene expression (RPM)
SRP051959_spleen 5 .25 RPM
SRP051959_skeletal_muscle 2 .31 RPM
SRP051959_lymph_node 9 .61 RPM
SRP051959_lung 7 .81 RPM
SRP051959_liver 0 .71 RPM
SRP051959_kidney 1 .69 RPM
SRP051959_heart 8 .16 RPM
SRP051959_colon 9 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004556 ortholog_one2many 2 retrogenes
retro_btau_708, retro_btau_709,
Cavia porcellus ENSCPOG00000003074 ortholog_many2many 1 retrogene
retro_cpor_761,
Cavia porcellus ENSCPOG00000009834 ortholog_many2many 1 retrogene
retro_cpor_760,
Cavia porcellus ENSCPOG00000011295 ortholog_many2many 1 retrogene
retro_cpor_587,
Felis catus ENSFCAG00000001625 ortholog_one2many 1 retrogene
retro_fcat_1924,
Homo sapiens ENSG00000059804 ortholog_one2many 2 retrogenes
retro_hsap_3983, retro_hsap_401,
Gorilla gorilla ENSGGOG00000016813 ortholog_one2one 1 retrogene
retro_ggor_398,
Macaca mulatta ENSMMUG00000000439 ortholog_one2one 2 retrogenes
retro_mmul_2301, retro_mmul_502,
Nomascus leucogenys ENSNLEG00000026903 ortholog_one2many 2 retrogenes
retro_nleu_1572, retro_nleu_1904,
Oryctolagus cuniculus ENSOCUG00000008575 ortholog_many2many 1 retrogene
retro_ocun_352,
Pongo abelii ENSPPYG00000004234 ortholog_one2many 1 retrogene
retro_pabe_3274,
Pongo abelii ENSPPYG00000004235 ortholog_one2many 1 retrogene
retro_pabe_315,
Pan troglodytes ENSPTRG00000004624 ortholog_one2many 1 retrogene
retro_ptro_2703,
Pan troglodytes ENSPTRG00000004626 ortholog_one2many 1 retrogene
retro_ptro_307,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_446 80.11 70.62
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Download FASTA sequences of all ENSCJAG00000018988 retrocopies