Parental gene:

SLC2A3, ENSPPYG00000004234

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:12:8173028..8248705(-)


>ENSPPYG00000004234
ATGGGGACACAGAAGGTCACCCCAGCTCTGATCTTTGCCATCACAGTTGCTACAATCGGCTCTTTCCAATTTGGCTACAA
CACTGGGGTCATCAATGCTCCTGAGACGATCATAAAGGAATTTATCGATAAAAGTTTGACGGACAAGACAAATGCCCCTC
CCTCTGAGGTGCTGCTCACGTCTCTTTGGTCCTGGTCTGTGGCCATATTCTCCATCGGGGGTATGATAGGCTCCTTTTCC
GTCGGACTGTTTGTCAACCGCTTTGGCAGGCGCAATTCAATGCTGATCGTCAACTTGTTGGCTGTCACTGGCGGCTGCCT
TATGGGACTGTGTAAAATAGCTAAGTCGGTTGAAATGCTGATCCTGGGCCGCTTGGTTATTGGCCTTTTCTGCGGACTCT
GCACAGGTTTTGTGCCCATGTACATTGGAGAGATCTCGCCTACTGCCCTGAGGGGTGCCTTTGGCACTCTCAACCAGCTG
GGCATAGTTATTGGAATTCTGGTGGCCCAGATCTTTGGTCTGGAATTCATCCTTGGGTCTGAAGAGCTATGGCCGGTGCT
ATTAGGCTTTACCATCCTTCCAGCTATCCTGCAAAGTGCAGCCCTTCCATGTTGCCCTGAAAGTCCCAGATTTTTGCTCA
TTAACAGAAAAGAAGAGGAGAATGCTAAGCGGATCCTCCAGGGGTTGTGGGGCACCCAGGATGTATCCCAAGACATCCAG
GAGATGAAAGATGAGAGTGCAAGGATGTCACAAGAAAAGCAAGTCACCGTGCTGGAGCTCTTTAGAGTGTCCAGCTACCG
ACAGCCCATCATCATTTCCATTGTGCTGCAGCTCTCTCAGCAGCTCTCTGGGATCAATGCTGTGTTCTATTACTCAACAG
GAATCTTCAAGGATGCAGGTGTTCAAGAGCCCATCTATGCCACCATCGGCGCGGGTGTGGTTAATACTGTCTTCACTGTA
GTTTCTCTATTTCTGGTGGAAAAGGCAGGAAGAAGGACTTTGCATATGATAGGCCTTGGAGGGATGGCTTTTTGTTCCAC
GCTCATGACTGTTTCTTTGTTATTAAAGGATCACTATAATGGGATGAGCTTTGTCTGTATTGGGGCTATCTTGGTCTTTG
TGGCCTTTTTTGAAATTGGACCAGGCCCCATTCCCTGGTTTATTGTGGCCGAACTCTTCAGTCAGGGCCCCCGCCCAGCT
GCGATGGCAGTGGCCGGCTGCTCCAACTGGACCTCCAACTTCCTAGTCGGATTGCTCTTCCCCTCTGCTGCTTACTATTT
AGGAGCCTACGTTTTTATTATCTTCACCGGCTTCCTCATTACCTTCTTGGCCTTTACCTTCTTCAAAGTCCCTGAGACCC
GTGGCAGGACTTTTGAGGATATCACACGGGCCTTTGAAGGGCAGGCACACGGTGCAGATAGATCTGGGAAAGACGGTGTC
ATGGAGATGAACAGCATGGAGCCTGCTAAGGAGACCACCACCAATGTCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 22 .17 RPM
SRP007412_cerebellum 12 .65 RPM
SRP007412_heart 7 .41 RPM
SRP007412_kidney 4 .38 RPM
SRP007412_liver 15 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004556 ortholog_one2many 2 retrogenes
retro_btau_708, retro_btau_709,
Callithrix jacchus ENSCJAG00000018988 ortholog_one2many 1 retrogene
retro_cjac_446,
Cavia porcellus ENSCPOG00000003074 ortholog_many2many 1 retrogene
retro_cpor_761,
Cavia porcellus ENSCPOG00000009834 ortholog_many2many 1 retrogene
retro_cpor_760,
Cavia porcellus ENSCPOG00000011295 ortholog_many2many 1 retrogene
retro_cpor_587,
Felis catus ENSFCAG00000001625 ortholog_one2many 1 retrogene
retro_fcat_1924,
Macaca mulatta ENSMMUG00000000439 ortholog_one2many 2 retrogenes
retro_mmul_2301, retro_mmul_502,
Nomascus leucogenys ENSNLEG00000026903 ortholog_many2many 2 retrogenes
retro_nleu_1572, retro_nleu_1904,
Oryctolagus cuniculus ENSOCUG00000008575 ortholog_many2many 1 retrogene
retro_ocun_352,
Pongo abelii ENSPPYG00000004235 within_species_paralog 1 retrogene
retro_pabe_315,
Pan troglodytes ENSPTRG00000004624 ortholog_one2one 1 retrogene
retro_ptro_2703,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3274 83.10 70.77
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Download FASTA sequences of all ENSPPYG00000004234 retrocopies