Parental gene:

THOC5, ENSCJAG00000019894

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:192375468..192418222(-)


>ENSCJAG00000019894
ATGTCATCAGAATCAAGCAAAAAACGGAAGCCCAAAGTGATCCGAAGCGATGGAGCCCCACCTGAAGGAAAGCGGAATCG
ATCTGATACCGAGCAGGAAGGTAAATACTACAGTGAGGAGGCTGAGATGGATCTGCGGGACCCTGGCAGAGACTATGAGT
TATACAAGTACACCTGCCAGGAGCTACAGAGGCTGATGGCTGAGATCCAAGACCTGAAGAGCAGGGGTGGCAAGGATGTG
GCAATTGAAATAGAAGAACGGAGGATCCAGAGCTGTGTGCATTTCATGACTTTGAAAAAGCTTAACCGATTAGCCCACAT
CAGGTTGAAGAAAGGAAGAGATCAGACCCATGAGGCTAAGCAGAAAGTAGATGCCTATCACCTGCAGCTCCAGAACCTGT
TGTATGAGGTGATGCACCTACAAAAGGAGATCACCAAATGTTTGGAGTTTAAGTCAAAGCATGAAGAAATTGATCTGGTC
AGTTTAGAGGAGTTTTATGAGGAGGCTCCACCAGATATCAGCAAGGCTGAAGTCACCATGGGAGACCCTCACCAGCAAAC
ACTGGCACGCCTGGACTGGGAGCTGGAGCAGCGTAAAAGGCTGGCAGAGAAGTACTGTGAATGCCTATCCAACAAGGAGA
AGATCCTCAAGGAAATTGAGGTGAAGAAGGAATACCTGAGCAGCCTCCAGCCTCGCCTCAACAGCATCATGCAGGCTTCC
CTTCCGGTGCAGGAGTACCTATTTATGCCATTTGACCAGGCTCACAAGCAGTATGAGACTGCCAGGCACCTGCCACCTCC
CCTATATGTCCTCTTTGTTCAGGCCACTGCATATGGGCAGGCCTGTGATAAGACGTTATCTGTGGCAATTGAAGGCAGTG
TGGATGAAGCCAAGGCTCTGTTCAAGCCTCCAGAGGACTCCCAAGATGACGAGAGTGACTCAGATGCTGAGGAGGAGCAG
ACCACGAAACGTCGGAGACCCACGCTGGGGGTTCAGTTGGATGACAAACGCAAGGAGATGCTGAAGAGGCACCCACTGTC
CGTCATGCTTGACCTAAAGTGCAAAGATGACAGTGTGCTTCACCTGACTTTCTTCTACCTCATGAACCTCAACATCATGA
CAGTAAAAGCCAAAGTGACAACTGCCACGGAGCTGATCACCCCCATCAGTGCAGGTGACTTGCTGTCTCCTGACTCAGTC
CTGAGTTGCTTGTATCCTGGGGATCATGGAAAGAAAACTCCGAATCCAGCCAATCAGTATCAGTTTGATAAAGTTGGCAT
CCTGACTTTGAGCGACTATGTACTCGAGTTAGGTCACCCCTATTTGTGGGTACAGAAGCTAGGTGGTCTCCACTTCCCCA
AAGAGCAGCCCCAGCAAACAGTAATTGCTGATCACTCGCTGAGCGCCAGCCACATGGAGACCACCATGAAACTTCTGAAG
ACCAGGGTGCAGTCCCGCCTGGCCCTCCACAAACAGTTTGCCTCCCTAGAACATGGCATTGTGCCAGTTACCAGTGATTG
CCAGTACCTCTTCCCTGCCAAGGTTGTCTCTCGCCTGGTAAAGTGGGTGACAGTTGCCCATGAGGATTACATGGAGCTGC
ATTTCACCAAAGACATTGTGGATGCGGGGCTGGCTGGGGACACCAATCTCTACTACATGGCACTCGTCGAAAGGGGCACA
GCCAAACTGCAGGCTGCTGTGGTATTGAACCCTGGTTACTCCTCCATCCCACCTATTTTTCAGCTCTGTTTGAACTGGAA
AGGGGAGAAAACCAACAGCAACGATGACAACATTCGGGCCATGGAGAGTGAAGTCAATGTGTGCTACAAGGAGCTGTGTG
GCCCTTGGCCCAGCCACCAGCTGTTGACCAACCAGCTGCAGCGGCTGTGTGTGCTGCTGGATGTTTACCTGGAGACCGAG
AGCCATGACGACAGTGTGGAGGGGCCCAAGGAATTTCCTCAGGAGAAGATGTGTCTGCGGCTCTTCAGGGGTCCTAGCAG
GATGAAGCCATTTAAATACAACCATCCTCAGGGATTCTTCAGCCATCGCTGA

Library Parental gene expression (RPM)
SRP051959_spleen 34 .98 RPM
SRP051959_skeletal_muscle 44 .86 RPM
SRP051959_lymph_node 38 .70 RPM
SRP051959_lung 31 .88 RPM
SRP051959_liver 30 .95 RPM
SRP051959_kidney 31 .73 RPM
SRP051959_heart 26 .61 RPM
SRP051959_colon 23 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000010974 ortholog_one2one 1 retrogene
Felis catus ENSFCAG00000004247 ortholog_one2one 1 retrogene
Myotis lucifugus ENSMLUG00000012135 ortholog_one2one 1 retrogene
Tursiops truncatus ENSTTRG00000000542 ortholog_one2one 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1965 87.84 91.36
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2. retro_cjac_2647 90.43 84.19
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Download FASTA sequences of all ENSCJAG00000019894 retrocopies