Parental gene: | ABCF2, ENSCJAG00000020371 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 8:95575121..95593450(+) |
>ENSCJAG00000020371
ATGCCCTCCGACCTGGCCAAGAAGAAGGCGGCCAAAAAGAAGGAGGCTGCCAAAGCTCGACAGCGGCCCAGAAAAGGACA
TGAAGAAAATGGAGATGCTGTCACAGAACCACAGGTGGCAGAGGAGAAAAATGAGGCCAATGGCAGAGAGACCACAGAAG
TGGATTTGCTGACCAAGGAGCTCGAGGACTTTGAGATGAAGAAAGCTGCTGCTCGAGCTGTCACTGGCGTCCTGGCTTCT
CACCCCAATAGTACCGACGTTCACATTATCAACCTGTCACTCACCTTTCACGGTCAAGAGCTGCTCAGTGACACCAAACT
GGAATTAAACTCAGGCCGTCGTTATGGCCTCATTGGCTTAAATGGAATTGGAAAGTCCATGTTGCTCTCTGCTGTTGGGA
AACGTGAAGTGCCCATCCCTGAGCATATCGACATCTACCATCTGACTCGAGAGATGCCCCCGAGTGACAAGACACCTTTG
CAGTGTGTGATGGAAGTTGACACAGAGCGGGCCATGCTGGAGAGGGAGGCAGAGCGGCTGGCTCATGAGGATGCGGAGTG
TGAGAAGCTCATGGAGCTCTATGAACGCCTGGAGGAGCTGGATGCTGACAAGGCAGAGATGAGGGCCTCGCGGATCTTGC
ACGGACTGGGTTTCACACCTGCCATGCAGCGCAAGAAGCTGAAAGACTTCAGTGGGGGCTGGAGGATGAGGGTTGCCCTT
GCCAGAGCCCTTTTTATTCGGCCCTTCATGCTGCTCCTGGATGAGCCCACCAACCACCTGGACCTAGATGCTTGCGTGTG
GTTGGAAGAAGAACTAAAAACTTTTAAGCGCATCTTGGTCCTCGTCTCCCATTCCCAGGATTTTCTGAATGGTGTCTGTA
CCAACATCATTCACATGCACAACAAGAAACTGAAGTATTATACGGGTAATTATGATCAGTATGTGAAGACACGACTAGAG
CTGGAGGAGAACCAGATGAAGAGGTTTCATTGGGAGCAAGATCAGATTGCACACATGAAGAACTACATTGCGAGGTTTGG
TCATGGCAGTGCCAAGCTGGCACGGCAGGCCCAGAGCAAGGAAAAGACGCTACAGAAAATGATGGCATCAGGACTGACAG
AGAGGGTCGTGAGCGACAAGACACTGTCATTTTACTTCCCACCATGTGGCAAGATCCCGCCACCCGTCATTATGGTGCAA
AATGTGAGCTTCAAGTATACAAAAGATGGGCCTTGCATCTACAATAATCTAGAATTTGGAATTGACCTTGACACACGAGT
GGCTCTGGTAGGGCCCAATGGAGCAGGAAAGTCAACTCTTCTGAAGCTGCTAACTGGAGAGCTACTACCCACAGATGGCA
TGATCCGAAAACACTCTCATGTCAAGATAGGGCGTTACCATCAGCATTTACAAGAGCAGCTGGACTTAGATCTCTCACCT
TTGGAGTACATGATGAAGTGCTACCCGGAGATCAAGGAGAAGGAAGAAATGAGGAAGATCATTGGGCGATACGGTCTCAC
TGGGAAACAGCAGGTGAGCCCAATCCGGAACTTGTCAGACGGGCAGAAGTGCCGAGTATGTCTGGCCTGGCTGGCCTGGC
AGAACCCCCACATGCTCTTCCTGGACGAGCCCACCAATCACCTGGATATTGAGACCATCGACGCCCTGGCAGATGCCATC
AATGAGTTTGAGGGTGGTATGATGCTGGTCAGCCATGACTTCAGACTCATTCAGCAGGTTGCACAGGAAATTTGGGTCTG
TGAGAAGCAGACAATCACCAAGTGGCCTGGAGACATCCTGGCTTACAAAGAGCACCTCAAGTCCAAGCTGGTGGATGAGG
AGCCACAGCTCACCAAGAGGACCCACAACGTGTGCACCCCGACATCGGCATCTCTGCCAAGGCCATGA
ATGCCCTCCGACCTGGCCAAGAAGAAGGCGGCCAAAAAGAAGGAGGCTGCCAAAGCTCGACAGCGGCCCAGAAAAGGACA
TGAAGAAAATGGAGATGCTGTCACAGAACCACAGGTGGCAGAGGAGAAAAATGAGGCCAATGGCAGAGAGACCACAGAAG
TGGATTTGCTGACCAAGGAGCTCGAGGACTTTGAGATGAAGAAAGCTGCTGCTCGAGCTGTCACTGGCGTCCTGGCTTCT
CACCCCAATAGTACCGACGTTCACATTATCAACCTGTCACTCACCTTTCACGGTCAAGAGCTGCTCAGTGACACCAAACT
GGAATTAAACTCAGGCCGTCGTTATGGCCTCATTGGCTTAAATGGAATTGGAAAGTCCATGTTGCTCTCTGCTGTTGGGA
AACGTGAAGTGCCCATCCCTGAGCATATCGACATCTACCATCTGACTCGAGAGATGCCCCCGAGTGACAAGACACCTTTG
CAGTGTGTGATGGAAGTTGACACAGAGCGGGCCATGCTGGAGAGGGAGGCAGAGCGGCTGGCTCATGAGGATGCGGAGTG
TGAGAAGCTCATGGAGCTCTATGAACGCCTGGAGGAGCTGGATGCTGACAAGGCAGAGATGAGGGCCTCGCGGATCTTGC
ACGGACTGGGTTTCACACCTGCCATGCAGCGCAAGAAGCTGAAAGACTTCAGTGGGGGCTGGAGGATGAGGGTTGCCCTT
GCCAGAGCCCTTTTTATTCGGCCCTTCATGCTGCTCCTGGATGAGCCCACCAACCACCTGGACCTAGATGCTTGCGTGTG
GTTGGAAGAAGAACTAAAAACTTTTAAGCGCATCTTGGTCCTCGTCTCCCATTCCCAGGATTTTCTGAATGGTGTCTGTA
CCAACATCATTCACATGCACAACAAGAAACTGAAGTATTATACGGGTAATTATGATCAGTATGTGAAGACACGACTAGAG
CTGGAGGAGAACCAGATGAAGAGGTTTCATTGGGAGCAAGATCAGATTGCACACATGAAGAACTACATTGCGAGGTTTGG
TCATGGCAGTGCCAAGCTGGCACGGCAGGCCCAGAGCAAGGAAAAGACGCTACAGAAAATGATGGCATCAGGACTGACAG
AGAGGGTCGTGAGCGACAAGACACTGTCATTTTACTTCCCACCATGTGGCAAGATCCCGCCACCCGTCATTATGGTGCAA
AATGTGAGCTTCAAGTATACAAAAGATGGGCCTTGCATCTACAATAATCTAGAATTTGGAATTGACCTTGACACACGAGT
GGCTCTGGTAGGGCCCAATGGAGCAGGAAAGTCAACTCTTCTGAAGCTGCTAACTGGAGAGCTACTACCCACAGATGGCA
TGATCCGAAAACACTCTCATGTCAAGATAGGGCGTTACCATCAGCATTTACAAGAGCAGCTGGACTTAGATCTCTCACCT
TTGGAGTACATGATGAAGTGCTACCCGGAGATCAAGGAGAAGGAAGAAATGAGGAAGATCATTGGGCGATACGGTCTCAC
TGGGAAACAGCAGGTGAGCCCAATCCGGAACTTGTCAGACGGGCAGAAGTGCCGAGTATGTCTGGCCTGGCTGGCCTGGC
AGAACCCCCACATGCTCTTCCTGGACGAGCCCACCAATCACCTGGATATTGAGACCATCGACGCCCTGGCAGATGCCATC
AATGAGTTTGAGGGTGGTATGATGCTGGTCAGCCATGACTTCAGACTCATTCAGCAGGTTGCACAGGAAATTTGGGTCTG
TGAGAAGCAGACAATCACCAAGTGGCCTGGAGACATCCTGGCTTACAAAGAGCACCTCAAGTCCAAGCTGGTGGATGAGG
AGCCACAGCTCACCAAGAGGACCCACAACGTGTGCACCCCGACATCGGCATCTCTGCCAAGGCCATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 11 .49 RPM |
| SRP051959_skeletal_muscle | 45 .90 RPM |
| SRP051959_lymph_node | 11 .99 RPM |
| SRP051959_lung | 11 .81 RPM |
| SRP051959_liver | 11 .24 RPM |
| SRP051959_kidney | 12 .71 RPM |
| SRP051959_heart | 13 .80 RPM |
| SRP051959_colon | 13 .71 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000004830 | ortholog_one2one | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000012672 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000008032 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000006679 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000000245 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_381 | 66.87 | 51.02 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1859 | 92.90 | 51.02 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3526 | 86.72 | 56.73 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000020371 retrocopies