Parental gene:

RIOK3, ENSCJAG00000020556

Aliases:None
Description:RIO kinase 3 [Source:HGNC Symbol;Acc:11451]
Organism:Marmoset (Callithrix jacchus)
Coordinates:13:60826960..60868651(+)


>ENSCJAG00000020556
ATGGCAGTACGGGGACAGGGCAGAGCCTGGGCCAAAGGAAGCCACACCCAGTCGCGGCCCGACCCTGGCGGACACCGGCA
ACGTGACCCCAAGAAGCGACTGTCCCCGCGAATTGGGCGGAAGAGGAGCGATCCAGTTCCGGACGCGGCCGCCGCTGCCG
CCATCTGTCACCTCCTCCGGCACCAGCAGCCAGTCGCCCCTGCCCCGCCTGTCTCCTCAGCGGAGCCTGCTTCCCGTCCT
GCCACCTCTCTGCTCTGTTTCTGTCGCTGCCTTCATCCCCCAATGGATCTGGTAGGAGTGGCATCGCCTGAGCCCGGGCC
GGCAGCGGCCTGGGGACCCAGCAAGTGTCCTTGGGCTATCCCTCAAAATACAATATCTTGTTCTTTGGCTGATGTAATGA
GTGAACAGCTGGCCAAAGAATTGCAGTTAGAAGAAGAAGCTGCTGTTTTTCCTGAAGTTGCTGTTGCTGAAGGACCATTT
ATTACTGGAGAAAACATTGATACTTCCAGTGACCTTATGCTGGCTCAGATGCTACAGATGGAATTTGACAGAGAATATGA
CGCACAGCTTAGGCGTGAAGAAAAAAAATTCAATGGAGATAGCAAAGTTTCCATTTCCTTTGAAAATTATCGAAAAGTGC
ATCCTTATGAAGACAGCGATAGCTCTGAAGATGAGGTTGACTGGCAGGATACTCGTGATGATCCCTACAGACCAGCAAAA
CCGGTTCCCACTCCCAAAAAGGGCTTTATTGGAAAAGGAAAAGATATCACCACCAAACATGACGAAGTAGTATGTGGGAG
AAAGAATACAGCAAGAATGGAAAATTTTGCACCTGAGTTTCAGGTAGGGGATGGAATTGGAATGGATTTAAAACTATCAA
ACCATGTTTTCAATGCTTTAAAACAACATGCCTACTCAGAAGAACGTCGAAGTGCCCGCCTACATGAAAAAAAGGAGCAT
TCAACAGCAGAAAAAGCAGTTGATCCTAAGACACGTTTACTTATGTATAAAATGGTGAACTCTGGAATGCTGGAGACAAT
CACTGGCTGTATTAGCACAGGAAAGGAATCTGTTGTCTTTCATGCATATGGAGGGAGCATGGAGGATGAAAAGGAAGATA
GTAAAGTTATACCTACAGAATGTGCCATCAAGGTATTTAAAACAACCCTTAATGAGTTTAAGAATCGTGACAAATATATT
AAAGATGATTTCAGGTTTAAAGATCGCTTCAGTAAACTAAATCCACGTAAGATCATCCGCATGTGGGCAGAAAAAGAAAT
GCACAATCTCACAAGAATGCAGAGAGCTGGAATTCCTTGTCCAACAGTTGTACTACTCAAGAAACACATTTTAGTTATGT
CTTTTATTGGCCATGATCAAGTTCCAGCTCCTAAATTAAAAGAAGTAAAGCTCAATAGTGAAGAAATGAAAGAAGCCTAC
TATCAAACTCTTCACTTGATGCGGCAGTTATATAATGAATGTACACTTGTCCATGCTGACCTCAGTGAGTACAACATGCT
GTGGCATGCTGGAAAGGTCTGGTTGATTGATGTCAGTCAGTCAGTAGAACCTACCCATCCTCATGGCCTGGAGTTCTTGT
TCCGGGACTGCAGGAATGTCTCGCAGTTTTTCCAGAAAGGAGGAGTCAAGGAAGCCCTTAGTGAACGGGAACTCTTCAAT
GCTGTTTCAGGCTTAAACATCTCAGCAGATAATGAAGCTGATTTTTTAGCTGAGATAGAAGCTTTGGAGAAAATGAATGA
AGATCACGTTCAGAAGAATGGAAGGAAAGCTGCTTCATTTTTGAAAGATGATGGAGACCCACCAGTACCATATGATGAAT
AG

Library Parental gene expression (RPM)
SRP051959_spleen 40 .21 RPM
SRP051959_skeletal_muscle 48 .02 RPM
SRP051959_lymph_node 31 .12 RPM
SRP051959_lung 42 .44 RPM
SRP051959_liver 33 .14 RPM
SRP051959_kidney 29 .60 RPM
SRP051959_heart 23 .47 RPM
SRP051959_colon 35 .90 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000008343 ortholog_one2one 1 retrogene
retro_chof_1788,
Echinops telfairi ENSETEG00000003689 ortholog_one2one 1 retrogene
retro_etel_2181,
Macropus eugenii ENSMEUG00000006292 ortholog_one2one 1 retrogene
retro_meug_1278,
Macaca mulatta ENSMMUG00000021478 ortholog_one2one 1 retrogene
retro_mmul_1291,
Ochotona princeps ENSOPRG00000004803 ortholog_one2one 2 retrogenes
retro_opri_1034, retro_opri_946,
Pongo abelii ENSPPYG00000009062 ortholog_one2one 1 retrogene
retro_pabe_1011,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2617 88.55 90.70
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Download FASTA sequences of all ENSCJAG00000020556 retrocopies