Parental gene: | CDYL, ENSCJAG00000021374 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 4:23731884..24005547(-) |
>ENSCJAG00000021374
ATGGCATTTCAGGCAGGCCACGGGCCGGCCTGGGGAAAAAGCAGAAATACGAACTGGCAAGACAGCCCAACCCGAAATTT
ATTCCTGAAGAGAACCAATGTGTCAGCACCAGATGAGCCTTCAGACCCCTGCATCTCCACCAGCAGTGAGCAAAGTGGGG
CACAGCAGCCTCCTGGTTTACAGGTTGAAAGGATTGTTGACAAAAGGAAAAATAAAAAAGGGAAGACAGAGTATTTGGTT
CGGTGGAAAGGCTATGACAGCGAAGATGACACTTGGGAGCCGGAGCAGCACCTCGTCAACTGTGAGGAATACATCCATGA
TTTCAACAGACGCCACACGGAGAAGCAGAAAGAGAGCACGTTGACCAGAACAAACAGGACCTCTCCCAACAATGCTAGGA
AACAAATCTCCAGATCCACCAACAGCAACTTTTCTAAGACCTCTTCTAAGGCACTTGTGATTGGGAAAGACCATGAATCC
AAAAACAGCCAGCTGTTTGCTGCCAGCCAGAAGTTCAGGAAGAACACAGCTCCATCTCTCTCCAGCCGGAAGAACATGGA
CCTAGCAAAGTCAGGTATCAAGATCCTCGTGCCTAAGAGCCCCATTAAGAGCAGGACCACAGTGGATGGCTTTCAGAGTG
AGAGCCCCGAGAAACTGGACCCCGTCGAGCAGGGTCAGGAGGACACGGTGGCGCCTGAAGTGGCAGCGGAAAAGCCAGTC
GGAGCTTTATTGGGCCCCGGTGCTGAGCGGGCCAGGATGGGGAGCAGGCCCCGGATACACCCGCTAGTGCCTCAGGTGCC
CGGCCCGGTGACTGCAGCCATGGCCACAGGCTTAGCTGTTAATGGGAAAGGTACATCGCCGTTCATGGATGCATTAACAG
CCAATGGGACAACCAACATACAGACATCTGTTACAGGAGTGACCACCAGCAAAAGGAAATTTATTGACGACAGAAGAGAC
CAGCCTTTTGACAAGCGATTGCGTTTCAGCGTGAGGCAAACAGAAAGTGCCTACAGATACAGAGATATTGTGGTCAGGAA
GCAGGATGGCTTCACTCACATCTTGTTATCCACAAAGTCCTCAGAGAATAACTCACTAAATCCAGAGGTAATGAGAGAAG
TCCAGAGTGCCCTGAGCACGGCCGCTGCTGATGACAGCAAGCTTGTACTGCTCAGCGCCGTTGGCAGCGTCTTCTGTTGT
GGACTTGACTTTATTTATTTTATACGACGTTTGACAGATGACAGGAAAAGAGAAAGCACTAAAATGGCAGAAGCTATCAG
AAACTTCGTGAATACGTTCATTCAATTTAAGAAGCCCATTATTGTAGCAGTCAATGGCCCGGCCATTGGGCTAGGAGCAT
CTATATTGCCTCTTTGTGATGTGGTTTGGGCTAACGAAAAAGCTTGGTTTCAAACACCCTATACTACCTTCGGACAGAGT
CCAGATGGCTGTTCTACCATTATGTTTCCCAAGATAATGGGAGGAGCATCTGCAAATGAGATGCTGCTGAGCGGGCGGAA
GCTGACGGCGCAGGAGGCGTGTGGCAAGGGCCTGGTCTCCCAGGTGTTTTGGCCCGGGACGTTCACTCAGGAAGTGATGG
TTCGCATTAAGGAGCTTGCCTCGTGCAACCCAGTTGTGCTGGAGGAGTCCAAAGCCCTTGTGCGCTGCAACATGAGGCTG
GAGCTGGAGCAGGCCAACGAGAGGGAGTGTGAGGTGCTGAAGAAAATCTGGGGTTCGGCACAAGGGATGGACTCCATGTT
AAAGTACTTGCAGAGGAAGATTGATGAGTTCTGA
ATGGCATTTCAGGCAGGCCACGGGCCGGCCTGGGGAAAAAGCAGAAATACGAACTGGCAAGACAGCCCAACCCGAAATTT
ATTCCTGAAGAGAACCAATGTGTCAGCACCAGATGAGCCTTCAGACCCCTGCATCTCCACCAGCAGTGAGCAAAGTGGGG
CACAGCAGCCTCCTGGTTTACAGGTTGAAAGGATTGTTGACAAAAGGAAAAATAAAAAAGGGAAGACAGAGTATTTGGTT
CGGTGGAAAGGCTATGACAGCGAAGATGACACTTGGGAGCCGGAGCAGCACCTCGTCAACTGTGAGGAATACATCCATGA
TTTCAACAGACGCCACACGGAGAAGCAGAAAGAGAGCACGTTGACCAGAACAAACAGGACCTCTCCCAACAATGCTAGGA
AACAAATCTCCAGATCCACCAACAGCAACTTTTCTAAGACCTCTTCTAAGGCACTTGTGATTGGGAAAGACCATGAATCC
AAAAACAGCCAGCTGTTTGCTGCCAGCCAGAAGTTCAGGAAGAACACAGCTCCATCTCTCTCCAGCCGGAAGAACATGGA
CCTAGCAAAGTCAGGTATCAAGATCCTCGTGCCTAAGAGCCCCATTAAGAGCAGGACCACAGTGGATGGCTTTCAGAGTG
AGAGCCCCGAGAAACTGGACCCCGTCGAGCAGGGTCAGGAGGACACGGTGGCGCCTGAAGTGGCAGCGGAAAAGCCAGTC
GGAGCTTTATTGGGCCCCGGTGCTGAGCGGGCCAGGATGGGGAGCAGGCCCCGGATACACCCGCTAGTGCCTCAGGTGCC
CGGCCCGGTGACTGCAGCCATGGCCACAGGCTTAGCTGTTAATGGGAAAGGTACATCGCCGTTCATGGATGCATTAACAG
CCAATGGGACAACCAACATACAGACATCTGTTACAGGAGTGACCACCAGCAAAAGGAAATTTATTGACGACAGAAGAGAC
CAGCCTTTTGACAAGCGATTGCGTTTCAGCGTGAGGCAAACAGAAAGTGCCTACAGATACAGAGATATTGTGGTCAGGAA
GCAGGATGGCTTCACTCACATCTTGTTATCCACAAAGTCCTCAGAGAATAACTCACTAAATCCAGAGGTAATGAGAGAAG
TCCAGAGTGCCCTGAGCACGGCCGCTGCTGATGACAGCAAGCTTGTACTGCTCAGCGCCGTTGGCAGCGTCTTCTGTTGT
GGACTTGACTTTATTTATTTTATACGACGTTTGACAGATGACAGGAAAAGAGAAAGCACTAAAATGGCAGAAGCTATCAG
AAACTTCGTGAATACGTTCATTCAATTTAAGAAGCCCATTATTGTAGCAGTCAATGGCCCGGCCATTGGGCTAGGAGCAT
CTATATTGCCTCTTTGTGATGTGGTTTGGGCTAACGAAAAAGCTTGGTTTCAAACACCCTATACTACCTTCGGACAGAGT
CCAGATGGCTGTTCTACCATTATGTTTCCCAAGATAATGGGAGGAGCATCTGCAAATGAGATGCTGCTGAGCGGGCGGAA
GCTGACGGCGCAGGAGGCGTGTGGCAAGGGCCTGGTCTCCCAGGTGTTTTGGCCCGGGACGTTCACTCAGGAAGTGATGG
TTCGCATTAAGGAGCTTGCCTCGTGCAACCCAGTTGTGCTGGAGGAGTCCAAAGCCCTTGTGCGCTGCAACATGAGGCTG
GAGCTGGAGCAGGCCAACGAGAGGGAGTGTGAGGTGCTGAAGAAAATCTGGGGTTCGGCACAAGGGATGGACTCCATGTT
AAAGTACTTGCAGAGGAAGATTGATGAGTTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 11 .26 RPM |
| SRP051959_skeletal_muscle | 10 .22 RPM |
| SRP051959_lymph_node | 10 .39 RPM |
| SRP051959_lung | 12 .27 RPM |
| SRP051959_liver | 4 .74 RPM |
| SRP051959_kidney | 10 .18 RPM |
| SRP051959_heart | 9 .65 RPM |
| SRP051959_colon | 10 .98 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000011787 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000005695 | other_paralog | 1 retrogene | |
| Homo sapiens | ENSG00000153046 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000015920 | ortholog_one2many | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000017688 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2675 | 69.77 | 57.17 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3927 | 63.17 | 61.21 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_4003 | 59.76 | 60.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_4228 | 64.07 | 55.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_4229 | 70.16 | 57.83 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000021374 retrocopies