Parental gene: | LTBP4, ENSCJAG00000037941 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 22:34014433..34055301(+) |
>ENSCJAG00000037941
AGCCCCAGCCCCAGCCAGGTCGTCGAGGTCGCAGGGGTCGCCGGCCGCCTGGCCAGCGTTGCTACTTGTCGCTGCTGCCC
AGGCCAGACGTCTAGGAGGAGCCGCTGCATCCGAGCCTCCTGCAGGGTCCGAAGCTGCCAGCCCAAAAAGTGTGCGGGCC
CCCAGCGGTGCCTGAACCCAGTGCAAGCAGTGAGGAAGAGACAGGTGTCCCTCAACTGGCAGCCACTGACGCTGCAGGAG
GCCAGAGCTCTACTGAGACTACTGAGAAGGAGGCCCCCAGAGCGTGCCCCCGCTGGCAAGGCCCCGGTCCTGTGTCCCTT
GATCTGTCACAATGGTGGTGTGTGCGTGAAGCCTGACCGCTGCCTCTGTCCCCCGGACTTCGCTGGCAAGTTCTGCCAGT
TGCACTCCATGCCAGGCCTCACCCGCTCCGTGTACACTATGCCACTGGCCAACCACCGCGACGACGAGCACGGCGTGGCG
TCTATGGTGAGCGTCCACGTGGAGCACCCGCAGGAGGCATCGGTGGTGGTGCACCAGGTGGAGCGTGTGTCCGGCCCGTG
GGAGGAGGCGGACGCCGCACCCTACACGGTGTTGGCACAAAGTGCGCCACGGGAGGACAGCTACTCAGACGCCTCGGGCT
TCGGTTACTGCTTTCGGGAGCTGCGCGGAGGCGAATGTGCGTCCCCGCTGCCGGGGCTCCGGACGCAGGAGGTCTGCTGC
GGAGGGGCCGGCTTGGCCTGGGGCGTTCACGACTGTCAGCTGTGCTCAGAGCACCAGGGGAACTCTGAAAGAGTGGGCGC
CCCAGATGGACCTTGTCCAACCGGCTTTGAAAGAATTAATGGGTCCTGCGAAGATGTGGATGAGTGCGCGACTGGCGGAC
GTTGCCAGCACGGCGAGTGTGCAAACACGCGCGGCGGTTACACGTGCGTGTGCCCCGACGGCTTTCTGCTCGACTCGTCC
CGCAGCAGCTGCATCTCCCAACACGTGATCTCAGAGGCCAAAGGGCCCTGCTTCCGCGTGCTCCGCGACGGCGGCTGTTC
GCTGCCCATTCTGCGGAACATCACTAAACAGATCTGCTGCTGTAGCCGCGTGGGCAAGGCCTGGGGCCGGGGCTGCCAGC
TCTGCCCACCCTTCGGCTCAGAGGGTTTCCGGGAGATCTGCCCGGCTGGCCCTGGCTACCACTACTCGGCCTCCGACCTC
CGCTACAACACCAGACCCCTGGCCCAGGAGCCACCCCGAGTGTCACTCAGCCAGCCTCGTACCCTGCCAGCCACCTCTCG
GCCTTCTGCAGGCTTTCTGTCCACCCATCGCCCGGGGCCCAGGGCTGACCCCCAGCCCGATCCTCGGCCAGATCCCCGGC
CCGGCCCTGAGCTTCCCTTGCCCAGCATCCCTGCCTGGACTGGTCCTGAGATTGCTGAATCAGGTCCCTCCCCGGGCATG
TGTCAGCGCAACCCCCAGGTCTGCGGCCCAGGACGCTGCATTCCTCAGCCCAGCGGCTACACCTGCGCTTGCGACTCCGG
CTTTCGGCTCAGCCCCCAGGGCACCCGATGCATTGATGTGGACGAATGTCGCCGCCTGCCCCCGCCCTGTGCTTCCGGGC
GCTGCGAGAACTCAGCAGGCAGCTTTCGCTGCGTGTGCGGCCCGTTCCGAGCCGGCCCGCGGGCTACAGAATGCCCGGAC
GTGGACGAGTGCCACCGTGTGCCACCGCCGTGTGACCTCGGGCGCTGCGAGAACACGCCAGGCAGCTTCCTGTGCGTGTG
CCCCGCTGGGTACCAGGCTGTGCCGCACGGAGCCAGCTGCCAGGATGTGGATGAATGCACCCAGAGCCCAGGCCTCTGCG
GCCGAGGGGCCTGTGAGAACCTGCCCGGCTCTTTCCGCTGTGTTTGCCCGGCTGGCTTCCGGGGCTCGGCGTGCGAAGAG
GATGTGGATGAGTGTGCCCAGGAGCCACCGCCCTGTGGGCCCGGCCGCTGTGACAACACGGCAGGCTCCTTTCACTGTGC
CTGCCCAGCTGGCTTCCGCTCCCGAGGGCCTGGGGCCCCCTGCCAAGATGTGGACGAGTGTGCCCGTAGCCCCCCGCCCT
GCACCTATGGCCGGTGTGAGAACACAGAAGGCAGTTACCAGTGTGTCTGCCCCACTGGCTTCCAACCCAACGCTGCTGGC
TCTGAATGCGAGGATGTGGATGAGTGTGAGAACCACCTGGCATGCCCTGGGCAGGAGTGCCCACCAGAATGGATTGCAAG
ACCTGAAAAAAACGGCCACCACCTGCACCGTGGCAGATTAATGACAGATGTAGACGAATGCAGTTCGGGTGCCCCCTGTG
GTCCCCACGGCCACTGCACTAACACGGAAGGCTCCTTCCGCTGCAGCTGCGCGCCAGGCTACAGGGCGCCGTCGGGTCGG
CCGGGGCCCTGCGCAGATGTGAACGAGTGCTTGGAGGGCGACTTCTGCTTCCCTCACGGCGAGTGCCTCAACACCGATGG
CTCCTTTGCCTGTACTTGTGCCCCCGGCTACCGGCCCGGACCCCGCGGAGCCTCTTGCCTCGACGTGGACGAGTGCAGCG
AGGAGGACCTTTGCCAGAGCGGCATCTGTACCAACACCGACGGCTCCTTCGAGTGCATCTGTCCTCCGGGACACCGCGCC
GGCCCGGACCTCGCCTCCTGCCTCGACGTGGACGAATGTCGCGAGCGGGGGCCCCTGTGCGGGTCGCAGCGCTGTGAGAA
ACTCCCGAGAAACTTCCACTGGCTCCTCCGCTGTGATCCCGGGTACCCATACGGGCCCGAGGGCACTGTGACGTCAAATG
TGGATGAGTGCCAAGAATATGGTCCCGAGATTTGCGGAGCCCAGCGTTGTGAGAACACCCCTGGCTCCTACCACTGCACA
CCCGCCTGTGACCCTGGCTATCAGCCCACGCCAGGGGGCGGATGCCAGGATGTGGACGAATGCCGGAACCGGTCCTTCTG
CGGTGCCCACGCCGTGTGCCAGAACCTGCCCGGCTCCTTCCAGTGCCTCTGTGACCAGGGTTACGAGGGGGCGCGGGATG
GGCGTCACTGCGTGGATGTGAATGAGTGTGAAACACTCCAGGGTGTATGTGGAGCTGCTCTGTGTGAAAATGTTGAGGGC
TCCTTCCTCTGTGTCTGCCCCACCAGCCCGGAGGAGTTTGACCCCATGACTGGACGCTGTGTTCCCCCCCGAACTTCTGC
TGGCACATTCCCAGGCTCACAGCCCCAGGCACCTGCCAGCCCCGGTCTGCCGGCCAGGCCACCTCCACCTCGCCGACCCA
GCACACCTAGGCAGGGCCCTGTGGGAAGTGGGCGCCGGGAGTGCTACTTTGACACAGCGGCCCCAGATGCATGTGACAAC
ATCCTGGCTCGGAATGTGACATGGCAGGAGTGCTGCTGTACTGTGGGTGAGGGCTGGGGCAGCGGCTGCCGCATCCAGCA
GTGCCCGGGCACTGAAACAGCTGAGTACCAGTCATTGTGCCCCCACGGCCGGGGCTACCTGGCGCCCAGTGGAGACCCAA
GCCTCCGGAGAGATGTGGACGAATGTCAGCTCTTCCGAGACCAGGTGTGCAAGAGTGGCGTGTGCGTGAACACGGCCCCC
GGCTACTCGTGTTACTGCAGCAACGGTTACTACTACCACACACAGCGGCTGGAGTGCATTGATAATGACGAGTGCTCTGA
TGAGGAGCCGGCCTGTGAGGGTGGCCGCTGCATCAACACTGTGGGCTCTTATCACTGCACCTGCGAGTCCCCGCTGGTAC
TGGACGGCTCGGGGCGCCGCTGCGTCTCCAACGAGAGCCAGAGTCTCGATGACAATCTTGGAGTGTGCTGGCAGGAAGTG
GGGGCTGACCTCGTGTGCAGCCACCCTCGGCTGGATCGTCAAGCCACCTACACAGAGTGCTGCTGCCTGTATGGAGAGGC
CTGGGGCATGGACTGCGCCCTGTGCCCTGCCCAGGACTCAGATGACTTTGAGGCCCTGTGCAATGTGCTACGCCCCCCTG
CATATGGCCCCGTGCGACCAGGTGGCTTTGGACTCCCCTACGAGTATGGCCCAGACTTAGGTCCACCTTACCAGGGCCTC
CCGTATGGACCTGAGTTGTACCCACCACCTGTGCTACCCTACGACCCCTACCCACCACCACCTGGACCCTTTGCCCGCCG
GGAGGCCCCTTACGGGGCACCCCGCTTCGACATGCCAGACTTTGAGGATGATGGTGGCCCCTATGGCGAATCTGAGGCTC
CTGCCCCACCTGGCCCGGGCACGCGCTGGCCCTATCGGTCCCGGGACACCCGCCGCTCCTTCCCAGAACCTGAGGAGCTA
CCTGAAGGTGGCAGCTATGCTGGCACTCCATCTGAGCCCTATGAGGAGCTGGAGGCAGAGGAGTGCGGGATCCTGGACGG
CTGCACTAACGGGCGCTGCGTGCGCGTCCCGGCAGGCTTCACCTGCCGCTGCTTTGATGGCTACCGCTTGGACATGACCC
GCATGGCCTGCGTTGACATCAACGAGTGTGATGAGGCGGCATCCCCGCTGTGCGTCAATGCGCGCTGCCTCAACACGGAT
GGCTCCTTCCGCTGCATCTGTCGCCCGGGATTCGCACCCACACACCAGCCGCACCACTCCTGCTTCTGCGCATGTGCACG
GGGCCGCCCG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_colon | 13 .16 RPM |
| SRP051959_heart | 81 .88 RPM |
| SRP051959_kidney | 6 .41 RPM |
| SRP051959_liver | 1 .04 RPM |
| SRP051959_lung | 17 .91 RPM |
| SRP051959_lymph_node | 4 .06 RPM |
| SRP051959_skeletal_muscle | 8 .63 RPM |
| SRP051959_spleen | 13 .36 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000017963 | other_paralog | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_3343 | 56.84 | 51.67 | Please wait, loading  |
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| 2. | retro_cjac_3355 | 57.73 | 53.33 | Please wait, loading |
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| 3. | retro_cjac_3369 | 59.24 | 99.44 | Please wait, loading |
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| 4. | retro_cjac_3372 | 57.86 | 86.67 | Please wait, loading |
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| 5. | retro_cjac_3389 | 60.82 | 52.22 | Please wait, loading |
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| 6. | retro_cjac_3391 | 57.89 | 51.67 | Please wait, loading |
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| 7. | retro_cjac_3423 | 55.79 | 50.56 | Please wait, loading |
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| 8. | retro_cjac_3425 | 60.42 | 53.33 | Please wait, loading |
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| 9. | retro_cjac_3430 | 61.86 | 53.33 | Please wait, loading |
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| 10. | retro_cjac_3445 | 55.43 | 50.56 | Please wait, loading |
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| 11. | retro_cjac_3456 | 57.99 | 92.22 | Please wait, loading |
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| 12. | retro_cjac_3474 | 57.95 | 94.44 | Please wait, loading |
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| 13. | retro_cjac_3476 | 61.46 | 53.33 | Please wait, loading |
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| 14. | retro_cjac_3477 | 62.50 | 70.00 | Please wait, loading |
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| 15. | retro_cjac_3487 | 58.88 | 58.89 | Please wait, loading |
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| 16. | retro_cjac_3491 | 60.87 | 51.11 | Please wait, loading |
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| 17. | retro_cjac_3543 | 60.42 | 53.33 | Please wait, loading |
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| 18. | retro_cjac_3545 | 68.13 | 50.56 | Please wait, loading |
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| 19. | retro_cjac_3547 | 62.24 | 53.33 | Please wait, loading |
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| 20. | retro_cjac_3549 | 62.24 | 53.33 | Please wait, loading |
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| 21. | retro_cjac_3566 | 56.80 | 92.22 | Please wait, loading |
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| 22. | retro_cjac_3583 | 58.58 | 92.22 | Please wait, loading |
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| 23. | retro_cjac_3598 | 61.46 | 53.33 | Please wait, loading |
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| 24. | retro_cjac_3609 | 60.14 | 79.44 | Please wait, loading |
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| 25. | retro_cjac_3616 | 52.46 | 66.67 | Please wait, loading |
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| 26. | retro_cjac_3622 | 60.36 | 92.22 | Please wait, loading |
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| 27. | retro_cjac_3633 | 55.24 | 57.22 | Please wait, loading |
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| 28. | retro_cjac_3641 | 61.86 | 53.33 | Please wait, loading |
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| 29. | retro_cjac_3656 | 61.86 | 53.33 | Please wait, loading |
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| 30. | retro_cjac_3672 | 58.33 | 52.22 | Please wait, loading |
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| 31. | retro_cjac_3674 | 53.27 | 55.00 | Please wait, loading |
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| 32. | retro_cjac_3677 | 66.67 | 52.78 | Please wait, loading |
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| 33. | retro_cjac_3682 | 64.89 | 50.56 | Please wait, loading |
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| 34. | retro_cjac_3733 | 58.76 | 53.33 | Please wait, loading |
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| 35. | retro_cjac_3736 | 64.52 | 51.67 | Please wait, loading |
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Download FASTA sequences of all ENSCJAG00000037941 retrocopies