Parental gene:

ENSCJAG00000038151

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:13:54586721..54595079(-)


>ENSCJAG00000038151
ATGTCAAGCAAAAGAGCAAAGACCAAGACCACCAAGAAGCGCCCTCAGCGCGCAACATCCAATGTGTTTGCTATGTTTGA
CCAATCACAGATTCAGGAGTTCAAAGAGGCCTTCAACATGATTGATCAGAACAGAGATGGTTTCATCGACAAGGAAGATT
TGCATGATATGCTTGCTTCATTGGGGAAGAATCCAACTGATGAGTATCTGGATGCCATGATGAATGAGGCTCCAGGCCCC
ATCAATTTCACCATGTTCCTCACCATGTTTGGTGAGAAGTTAAATGGCACAGATCCTGAAGATGTCATCAGAAATGCTTT
TGCTTGCTTTGATGAAGAAGCAACTGGCACTATTCAGGAAGATTATCTGAGAGAGCTGCTGACAACCATGGGGGATCGGT
TTACGGATGAGGAAGTGGATGAGCTGTACAGAGAAGCGCCTATTGACAAAAAGGGGAACTTCAATTACATCGAGTTCACA
CGCATCCTGAAACATGGAGCAAAAGACAAAGATGACTGA

Library Parental gene expression (RPM)
SRP051959_spleen 57 .86 RPM
SRP051959_skeletal_muscle 249 .24 RPM
SRP051959_lymph_node 56 .50 RPM
SRP051959_lung 71 .27 RPM
SRP051959_liver 24 .82 RPM
SRP051959_kidney 34 .83 RPM
SRP051959_heart 103 .33 RPM
SRP051959_colon 39 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000016024 ortholog_one2many 2 retrogenes
retro_btau_1273, retro_btau_1693,
Canis familiaris ENSCAFG00000029134 ortholog_many2many 3 retrogenes
retro_cfam_166, retro_cfam_583, retro_cfam_79,
Choloepus hoffmanni ENSCHOG00000005206 ortholog_one2many 54 retrogenes
retro_chof_1002, retro_chof_1149, retro_chof_1238, retro_chof_1250, retro_chof_1273, retro_chof_1321, retro_chof_1326, retro_chof_135, retro_chof_1352, retro_chof_1363, retro_chof_1374, retro_chof_1439, retro_chof_1505, retro_chof_1520, retro_chof_1538, retro_chof_1553, retro_chof_1574, retro_chof_1594, retro_chof_1608, retro_chof_1641, retro_chof_1694, retro_chof_1783, retro_chof_1790, retro_chof_1798, retro_chof_1801, retro_chof_1804, retro_chof_1809, retro_chof_1875, retro_chof_1879, retro_chof_1887, retro_chof_2059, retro_chof_2114, retro_chof_2157, retro_chof_2180, retro_chof_2353, retro_chof_2430, retro_chof_2492, retro_chof_2510, retro_chof_2516, retro_chof_2597, retro_chof_2638, retro_chof_2639, retro_chof_2689, retro_chof_543, retro_chof_545, retro_chof_584, retro_chof_606, retro_chof_618, retro_chof_667, retro_chof_686, retro_chof_696, retro_chof_729, retro_chof_752, retro_chof_949,
Callithrix jacchus ENSCJAG00000012890 within_species_paralog 4 retrogenes
retro_cjac_3193, retro_cjac_3195, retro_cjac_3743, retro_cjac_637,
Echinops telfairi ENSETEG00000011271 ortholog_one2many 3 retrogenes
retro_etel_393, retro_etel_439, retro_etel_96,
Microcebus murinus ENSMICG00000017884 ortholog_one2many 2 retrogenes
retro_mmur_1194, retro_mmur_1585,
Mus musculus ENSMUSG00000024048 ortholog_one2many 1 retrogene
retro_mmus_1149,
Otolemur garnettii ENSOGAG00000001340 ortholog_one2many 7 retrogenes
retro_ogar_1877, retro_ogar_2516, retro_ogar_2536, retro_ogar_2540, retro_ogar_347, retro_ogar_517, retro_ogar_605,
Sorex araneus ENSSARG00000011512 ortholog_one2many 1 retrogene
retro_sara_102,
Ictidomys tridecemlineatus ENSSTOG00000027658 ortholog_one2many 2 retrogenes
retro_itri_1480, retro_itri_896,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1279 83.45 83.72
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2. retro_cjac_3119 82.18 100.00
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Download FASTA sequences of all ENSCJAG00000038151 retrocopies