Parental gene:

BRCC3, ENSCPOG00000001882

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_148:751393..808048(-)


>ENSCPOG00000001882
GAGGACGTGAGCGGGGTCGGAGCAATTCATCTGGAGTCTGACGCTTTCCTAGTTTGTCTCAACCATGCTCTGAGCACAGA
AAAGGAGGAGGTGATGGGACTGTGTATAGGGGAGTTGAATGATGATACAAGGAGTGACTCCAAATTTGCCTATACTGGAA
ATGAAATGCGCACAGTTGCTGAAAAGGTTGACACCGTCAGAATTGTTCACATTCATTCTGTCATCATCCTCCGACGTTCT
GATAAGAGGAAAGACCGGGTAGAAATCTCTCCTGAGCAACTGTCTGCAGCCTCAACAGAAGCAGAGACACACAGGTTGGC
AGAACTAACAGGTCGCCCCATGAGAGTTGTGGGCTGGTATCATTCCCACCCTCATATAACTGTTTGGCCTTCACATGTTG
CAGATGTTCGAACACAAGCCATGTACCAGATGATGGATCAGGGCTTTGTGGGTCTTATTTTTTCCTGTTTCATAGAGGAT
AAAAACACAAAGACTGGCCGGGTACTATACACTTGCTTCCAATCCATACAGGCCCAAAAGAGCTCAGAATATGAGAGAAT
TGAAATTCCAATCCATATCATACCTCATGTCACCATTGGGAAAGTGTGTCTTGAATCAGCAGTAGAGCTTCCCAAGATCC
TGTGCCAGGAGGAGCAAGATGCCTATCGGAGGATTCACAGCCTTACACACCTGGACTCAGTAACCAAAATCCATAATGGC
TCAGTGTTTACCAAGAATCTGTGCAGTCAAATGTCGGCAGTCAGCGGGCCTCTCCTGCAGTGGTTGGAAGACAGACTGGA
GCAAAATCAACAGCATTTGCAGGAGTTACAACAAGAAAAGGAAGAGCTTCTGCAAGAACTTTCTTCCTTAGACTGA

Library Parental gene expression (RPM)
SRP017611_brain 7 .48 RPM
SRP017611_kidney 9 .00 RPM
SRP017611_liver 8 .88 RPM
SRP040447_lung 9 .33 RPM
SRP040447_skeletal_muscle 7 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007817 ortholog_one2one 2 retrogenes
retro_btau_1327, retro_btau_1646,
Homo sapiens ENSG00000185515 ortholog_one2one 1 retrogene
retro_hsap_3271,
Gorilla gorilla ENSGGOG00000027248 ortholog_one2one 1 retrogene
retro_ggor_2226,
Monodelphis domestica ENSMODG00000016487 ortholog_one2one 1 retrogene
retro_mdom_930,
Mus musculus ENSMUSG00000031201 ortholog_one2one 1 retrogene
retro_mmus_672,
Nomascus leucogenys ENSNLEG00000014460 ortholog_one2one 1 retrogene
retro_nleu_2940,
Sarcophilus harrisii ENSSHAG00000005392 ortholog_one2one 1 retrogene
retro_shar_51,
Ictidomys tridecemlineatus ENSSTOG00000019781 ortholog_one2one 2 retrogenes
retro_itri_1271, retro_itri_806,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_388 78.98 60.48
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2. retro_cpor_627 64.78 53.95
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Download FASTA sequences of all ENSCPOG00000001882 retrocopies