Parental gene:

DCUN1D4, ENSCPOG00000008945

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_24:22529601..22580080(+)


>ENSCPOG00000008945
CTCCACAATTTAGCGCTTCATGTTGACTTCCAGCTGAACTCTCATCTCTCAACACTGGCAAATATTCATAAGATCTACCA
CACCCTTAATAAGCTAAATCTAACAGAAGACGTTGGCCAAGACGATCACCAAACAGGAAGCTTACGGTCTTGCAGTTCTT
CGGACTGCTTTAGTAAAGTGATGCCCCCAAGGAAAAAGAGAAGACCTGCCTCTGGAGATGACTTATCCGCCAAGAAGAGT
AGACATGACAGCATGTATCGAAAATATGATTCAACTAGAATTAAGACGGAAGAAGAGGCCTTCTCAAGTAAGCGGTGCTT
AGAGTGGTTCTATGAATATGCAGGTACTGAGGATGTTGTAGGTCCTGAAGGAATGGAGAAATTTTGTGAAGACATTGGTG
TAGAACCTGAAAATGTAGTTATGCTTGTCCTAGCTTGGAAATTGGATGCACAAAACATGGGTTACTTTACTCTCCAAGAA
TGGTTAACAGGAATGACTTCTTTACAATGTGATACAACAGAAAAACTCAGAAATTCTTTGGATTGCTTGAGATCATTATT
AAACGATTCTACAAACTTTAAGCTTATTTATAGATATGCATTTGACTTTGCACGGGAAAAGGACCAGCGCAGCCTAGACA
TAAACACTGCCAAGTGCATGTTGGGACTGTTATTAGGAAAAATCTGGCCCCTTTTTCCAGTTTTTCATCAATTCTTAGAG
CAATCAAAATATAAAGTGATTAACAAAGACCAGTGGTGCAATGTGCTTGAGTTCAGCAGAACCATTCATCTTGACCTCAG
CAACTACGACGAAGACGGAGCATGGCCAGTCTTGTTGGATGAGTTTGTGGAGTGGTACAAAGATAAGCAGATGTCCTAG

Library Parental gene expression (RPM)
SRP017611_brain 20 .36 RPM
SRP017611_kidney 16 .23 RPM
SRP017611_liver 13 .10 RPM
SRP040447_lung 12 .36 RPM
SRP040447_skeletal_muscle 9 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000018601 ortholog_one2one 1 retrogene
retro_cjac_3959,
Cavia porcellus ENSCPOG00000022086 within_species_paralog 4 retrogenes
retro_cpor_1289, retro_cpor_756, retro_cpor_758, retro_cpor_870,
Sarcophilus harrisii ENSSHAG00000017879 ortholog_one2one 1 retrogene
retro_shar_437,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1176 68.78 63.36
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2. retro_cpor_1179 75.84 99.66
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Download FASTA sequences of all ENSCPOG00000008945 retrocopies