Parental gene:

ENSCPOG00000022086

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_7:60779969..60798869(+)


>ENSCPOG00000022086
AACAAGTTGAAATCATCGCAGAAGGATAAAGTTCGACAGTTTATGATCTTCACACAATCTAGTGAAAAAACTGCAGTAAG
TTGTCTTTCTCAAAATGACTGGAAGTTAGATGTTGCAACAGATAATTTTTTCCAAAATCCTGAACTTTATATACGAGAGA
GTGTAAAAGGATCATTGGACAGGAAGAAGTTAGAACAACTATACAATAGATACAAAGATCCTCAAGATGAAAATAAAATT
GGAATAGATGGCATACAGCAGTTCTGTGATGACCTGGCACTTGATCCGGCCAGCATTAGTGTTTTGATCATTGCATGGAA
GTTCAGAGCAGCGACACAATGTGAGTTCTCCAAGCAGGAGTTCATGGACGGCATGGCAGAATTAGGATGTGACAGCATAG
ACAAGCTAAAGGCTCAAATACCCAAGATGGAACAAGAATTGAAAGAACCAGGACGATTTAAGGATTTTTACCAGTTTACT
TTTAATTTTGCAAAGAATCCAGGACAAAAAGGATTAGATCTAGAAATGGCCATTGCTTACTGGAATTTAGTGCTTAATGG
AAGATTTAAATTCTTAGACTTATGGAATAAATTTTTGTTGGAACATCATAAACGATCAATACCAAAAGATACTTGGAATC
TTCTTTTAGACTTCAGTACAATGATTGCAGATGACATGTCTAATTATGATGAAGAAGGAGCATGGCCTGTTCTTATTGAT
GACTTTGTGGAATTTGCACGCCCTCAAATTGCTGGGACAAAAAGTACAGCAGTG

Library Parental gene expression (RPM)
SRP017611_brain 10 .01 RPM
SRP017611_kidney 9 .42 RPM
SRP017611_liver 15 .45 RPM
SRP040447_lung 12 .56 RPM
SRP040447_skeletal_muscle 8 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013358 ortholog_one2many 14 retrogenes
retro_chof_1054, retro_chof_1129, retro_chof_1198, retro_chof_1373, retro_chof_1546, retro_chof_1728, retro_chof_2049, retro_chof_232, retro_chof_2329, retro_chof_2369, retro_chof_2373, retro_chof_479, retro_chof_767, retro_chof_812,
Callithrix jacchus ENSCJAG00000005148 ortholog_one2many 2 retrogenes
retro_cjac_1423, retro_cjac_2358,
Cavia porcellus ENSCPOG00000008945 within_species_paralog 2 retrogenes
retro_cpor_1176, retro_cpor_1179,
Dasypus novemcinctus ENSDNOG00000019073 ortholog_one2many 2 retrogenes
retro_dnov_1494, retro_dnov_840,
Echinops telfairi ENSETEG00000000166 ortholog_one2many 1 retrogene
retro_etel_1460,
Homo sapiens ENSG00000043093 ortholog_one2many 1 retrogene
retro_hsap_3502,
Gorilla gorilla ENSGGOG00000010767 ortholog_one2many 1 retrogene
retro_ggor_2368,
Macaca mulatta ENSMMUG00000010552 ortholog_one2many 1 retrogene
retro_mmul_1782,
Mustela putorius furo ENSMPUG00000002369 ortholog_one2many 1 retrogene
retro_mputfur_919,
Mus musculus ENSMUSG00000027708 ortholog_one2many 1 retrogene
retro_mmus_1009,
Nomascus leucogenys ENSNLEG00000005983 ortholog_one2many 1 retrogene
retro_nleu_793,
Otolemur garnettii ENSOGAG00000000658 ortholog_one2many 1 retrogene
retro_ogar_3499,
Pan troglodytes ENSPTRG00000015661 ortholog_one2many 1 retrogene
retro_ptro_2374,
Tarsius syrichta ENSTSYG00000012276 ortholog_one2many 1 retrogene
retro_tsyr_669,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_756 79.74 59.30
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2. retro_cpor_758 80.68 67.83
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3. retro_cpor_870 58.86 60.85
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4. retro_cpor_1289 78.93 100.00
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Download FASTA sequences of all ENSCPOG00000022086 retrocopies