Parental gene:

RBMXL1, ENSCPOG00000012164

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_79:5408506..5412631(+)


>ENSCPOG00000012164
ATGGTTGAAGCAGATCGCCCAGGAAAGCTCTTTATTGGTGGGCTTAATACCGAAACAAATGAGAAAGCCCTAGAAGCAGT
ATTTGGAAAATATGGACGGATAGTGGAAGTACTCTTGATGAAAGATCGAGAAACCAATAAATCAAGAGGATTTGCTTTTG
TTACCTTCGAAAGTCCAGCGGATGCGAAGGATGCAGCTAGAGACATGAATGGAAAGTCCTTAGATGGAAAAGCCATCAAG
GTGGAACAAGCCACCAAACCATCATTTGAAAGTGGTAGACGAGGACCACCTCCACCTCCGAGAAGCAGAGGCCCTCCCAG
AGGTCTTAGAGGAGGAAGAGGAGGAAGTGGAGGAACTAGGGGACCTCCCTCACATGGAGGGCACATGGATGATGGTGGCT
ATTCCATGAATTTTAACATGAGTTCTTCCAGAGGACCCCTTCCAGTGAAAAGAGGACCACCACCACGAAGTGGGGGTCCT
CCTCCTAAAAGATCGGCACCATCAGGACCAGTTCGCAGCAGCAGTGGAATGGGAGGAAGAGCCCCTGTATCTCGTGGAAG
AGATAGTTACGGAGGTCCACCTCGAAGGGAACCCCTGCCCTCTCGTAGAGATGTTTATTTGTCTCCAAGAGATGATGGAT
ATTCGACTAAAGATAGCTATTCAAGCAGAGATTACCCAAGTTCTCGTGATACAAGAGATTATGCCCCACCACCAAGAGAT
TATACATACCGTGATTATGGTCATTCCAGTTCACGTGATGACTATCCATCAAGAGGATATAGTGATAGAGATGGATATGG
TCGGGATCGTGACTATTCAGATCATCCGAGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATGGTAACTCACGTAGTG
CTCCACCTACACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGGGACGGATAT
GGTGGAAGTCGAGACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGGGTTGGCAGACAAGAACG
AGGGCTTCCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAAGAG
GTGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATAC

Library Parental gene expression (RPM)
SRP017611_brain 63 .90 RPM
SRP017611_kidney 67 .52 RPM
SRP017611_liver 33 .25 RPM
SRP040447_lung 95 .39 RPM
SRP040447_skeletal_muscle 35 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000013308 ortholog_one2one 1 retrogene
retro_btau_36,
Canis familiaris ENSCAFG00000018962 possible_ortholog 4 retrogenes
retro_cfam_1106, retro_cfam_1244, retro_cfam_1649, retro_cfam_1914,
Choloepus hoffmanni ENSCHOG00000012369 ortholog_one2one 3 retrogenes
retro_chof_1240, retro_chof_2596, retro_chof_880,
Cavia porcellus ENSCPOG00000003553 within_species_paralog 1 retrogene
retro_cpor_950,
Cavia porcellus ENSCPOG00000006313 within_species_paralog 1 retrogene
retro_cpor_162,
Felis catus ENSFCAG00000004779 possible_ortholog 1 retrogene
retro_fcat_1903,
Homo sapiens ENSG00000147274 possible_ortholog 7 retrogenes
retro_hsap_23, retro_hsap_3074, retro_hsap_3587, retro_hsap_4144, retro_hsap_4846, retro_hsap_800, retro_hsap_91,
Gorilla gorilla ENSGGOG00000006944 possible_ortholog 1 retrogene
retro_ggor_657,
Loxodonta africana ENSLAFG00000005568 possible_ortholog 3 retrogenes
retro_lafr_1188, retro_lafr_276, retro_lafr_35,
Microcebus murinus ENSMICG00000006856 possible_ortholog 2 retrogenes
retro_mmur_1252, retro_mmur_661,
Myotis lucifugus ENSMLUG00000013209 possible_ortholog 5 retrogenes
retro_mluc_1630, retro_mluc_1746, retro_mluc_203, retro_mluc_2180, retro_mluc_80,
Mustela putorius furo ENSMPUG00000001855 possible_ortholog 2 retrogenes
retro_mputfur_1539, retro_mputfur_956,
Mus musculus ENSMUSG00000031134 possible_ortholog 2 retrogenes
retro_mmus_170, retro_mmus_187,
Oryctolagus cuniculus ENSOCUG00000007220 possible_ortholog 1 retrogene
retro_ocun_3,
Pongo abelii ENSPPYG00000020771 possible_ortholog 3 retrogenes
retro_pabe_2548, retro_pabe_303, retro_pabe_766,
Rattus norvegicus ENSRNOG00000000866 possible_ortholog 1 retrogene
retro_rnor_268,
Ictidomys tridecemlineatus ENSSTOG00000006211 possible_ortholog 2 retrogenes
retro_itri_1205, retro_itri_1346,
Tupaia belangeri ENSTBEG00000001154 possible_ortholog 1 retrogene
retro_tbel_1919,
Tursiops truncatus ENSTTRG00000007322 possible_ortholog 1 retrogene
retro_ttru_1450,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_778 75.10 60.61
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Download FASTA sequences of all ENSCPOG00000012164 retrocopies